Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC211476.1-201ENST00000503899 468 ntBASIC17.99■□□□□ 0.47
HMGA1P17096 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC17.99■□□□□ 0.47
HMGA1P17096 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
HMGA1P17096 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.99■□□□□ 0.47
HMGA1P17096 MIR4469-201ENST00000583919 79 ntBASIC17.99■□□□□ 0.47
HMGA1P17096 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.99■□□□□ 0.47
HMGA1P17096 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.99■□□□□ 0.47
HMGA1P17096 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC17.99■□□□□ 0.47
HMGA1P17096 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC17.99■□□□□ 0.47
HMGA1P17096 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.99■□□□□ 0.47
HMGA1P17096 ACTL9-202ENST00000612068 1252 ntBASIC17.99■□□□□ 0.47
HMGA1P17096 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGA1P17096 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
HMGA1P17096 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.99■□□□□ 0.47
HMGA1P17096 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGA1P17096 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGA1P17096 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGA1P17096 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
HMGA1P17096 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGA1P17096 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC17.98■□□□□ 0.47
HMGA1P17096 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.98■□□□□ 0.47
HMGA1P17096 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.98■□□□□ 0.47
HMGA1P17096 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.98■□□□□ 0.47
HMGA1P17096 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.98■□□□□ 0.47
HMGA1P17096 AC023141.13-201ENST00000604991 943 ntBASIC17.98■□□□□ 0.47
HMGA1P17096 AL078644.1-201ENST00000609881 752 ntBASIC17.98■□□□□ 0.47
HMGA1P17096 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGA1P17096 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGA1P17096 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGA1P17096 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGA1P17096 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGA1P17096 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.98■□□□□ 0.47
HMGA1P17096 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
HMGA1P17096 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HMGA1P17096 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
HMGA1P17096 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.97■□□□□ 0.47
HMGA1P17096 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGA1P17096 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGA1P17096 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGA1P17096 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HMGA1P17096 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.97■□□□□ 0.47
HMGA1P17096 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HMGA1P17096 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.97■□□□□ 0.47
HMGA1P17096 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGA1P17096 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGA1P17096 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.97■□□□□ 0.47
HMGA1P17096 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGA1P17096 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.97■□□□□ 0.47
HMGA1P17096 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.97■□□□□ 0.47
HMGA1P17096 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC17.97■□□□□ 0.47
HMGA1P17096 MKNK2P1-201ENST00000437526 628 ntBASIC17.97■□□□□ 0.47
HMGA1P17096 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGA1P17096 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC17.97■□□□□ 0.47
HMGA1P17096 SMN2-210ENST00000511812 867 ntTSL 2 BASIC17.97■□□□□ 0.47
HMGA1P17096 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
HMGA1P17096 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC17.97■□□□□ 0.47
HMGA1P17096 AC007064.4-201ENST00000637740 555 ntBASIC17.97■□□□□ 0.47
HMGA1P17096 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGA1P17096 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
HMGA1P17096 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.97■□□□□ 0.47
HMGA1P17096 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGA1P17096 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGA1P17096 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
HMGA1P17096 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
HMGA1P17096 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGA1P17096 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
HMGA1P17096 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.97■□□□□ 0.47
HMGA1P17096 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGA1P17096 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGA1P17096 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGA1P17096 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGA1P17096 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
HMGA1P17096 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.96■□□□□ 0.47
HMGA1P17096 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
HMGA1P17096 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGA1P17096 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGA1P17096 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGA1P17096 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.96■□□□□ 0.47
HMGA1P17096 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGA1P17096 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
HMGA1P17096 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.96■□□□□ 0.47
HMGA1P17096 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGA1P17096 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.96■□□□□ 0.47
HMGA1P17096 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGA1P17096 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
HMGA1P17096 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.96■□□□□ 0.47
HMGA1P17096 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC17.96■□□□□ 0.47
HMGA1P17096 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.96■□□□□ 0.47
HMGA1P17096 AC074386.1-202ENST00000463561 864 ntBASIC17.96■□□□□ 0.47
HMGA1P17096 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGA1P17096 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.96■□□□□ 0.47
HMGA1P17096 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.96■□□□□ 0.47
HMGA1P17096 AC079781.4-201ENST00000641908 219 ntBASIC17.96■□□□□ 0.47
HMGA1P17096 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGA1P17096 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGA1P17096 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
HMGA1P17096 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGA1P17096 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGA1P17096 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.96■□□□□ 0.47
HMGA1P17096 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms