Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
SDCBPO00560 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC14.88□□□□□ -0.03
SDCBPO00560 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SDCBPO00560 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
SDCBPO00560 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SDCBPO00560 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SDCBPO00560 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC14.88□□□□□ -0.03
SDCBPO00560 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC14.88□□□□□ -0.03
SDCBPO00560 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
SDCBPO00560 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SDCBPO00560 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDCBPO00560 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDCBPO00560 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SDCBPO00560 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC14.87□□□□□ -0.03
SDCBPO00560 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SDCBPO00560 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDCBPO00560 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDCBPO00560 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
SDCBPO00560 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC14.87□□□□□ -0.03
SDCBPO00560 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
SDCBPO00560 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDCBPO00560 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDCBPO00560 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDCBPO00560 FAM8A6P-201ENST00000407496 1135 ntBASIC14.87□□□□□ -0.03
SDCBPO00560 AC211429.1-201ENST00000415277 523 ntBASIC14.87□□□□□ -0.03
SDCBPO00560 KRT18P57-201ENST00000443599 1254 ntBASIC14.87□□□□□ -0.03
SDCBPO00560 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC14.87□□□□□ -0.03
SDCBPO00560 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC14.87□□□□□ -0.03
SDCBPO00560 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC14.87□□□□□ -0.03
SDCBPO00560 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC14.87□□□□□ -0.03
SDCBPO00560 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SDCBPO00560 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDCBPO00560 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SDCBPO00560 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC14.87□□□□□ -0.03
SDCBPO00560 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDCBPO00560 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC14.87□□□□□ -0.03
SDCBPO00560 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
SDCBPO00560 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC14.87□□□□□ -0.03
SDCBPO00560 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDCBPO00560 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDCBPO00560 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
SDCBPO00560 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDCBPO00560 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
SDCBPO00560 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
SDCBPO00560 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDCBPO00560 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SDCBPO00560 AL391807.1-203ENST00000604392 2365 ntBASIC14.87□□□□□ -0.03
SDCBPO00560 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC14.87□□□□□ -0.03
SDCBPO00560 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
SDCBPO00560 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SDCBPO00560 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SDCBPO00560 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDCBPO00560 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.86□□□□□ -0.03
SDCBPO00560 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC14.86□□□□□ -0.03
SDCBPO00560 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC14.86□□□□□ -0.03
SDCBPO00560 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
SDCBPO00560 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
SDCBPO00560 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC14.86□□□□□ -0.03
SDCBPO00560 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDCBPO00560 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDCBPO00560 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC14.86□□□□□ -0.03
SDCBPO00560 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC14.86□□□□□ -0.03
SDCBPO00560 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDCBPO00560 TK2-213ENST00000563369 882 ntTSL 5 BASIC14.86□□□□□ -0.03
SDCBPO00560 P4HB-223ENST00000576390 439 ntTSL 4 BASIC14.86□□□□□ -0.03
SDCBPO00560 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC14.86□□□□□ -0.03
SDCBPO00560 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC14.86□□□□□ -0.03
SDCBPO00560 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDCBPO00560 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
SDCBPO00560 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDCBPO00560 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
SDCBPO00560 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDCBPO00560 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC14.86□□□□□ -0.03
SDCBPO00560 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC14.86□□□□□ -0.03
SDCBPO00560 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDCBPO00560 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDCBPO00560 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDCBPO00560 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDCBPO00560 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SDCBPO00560 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC14.86□□□□□ -0.03
SDCBPO00560 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDCBPO00560 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDCBPO00560 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDCBPO00560 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SDCBPO00560 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
SDCBPO00560 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
SDCBPO00560 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC14.86□□□□□ -0.03
SDCBPO00560 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC14.85□□□□□ -0.03
SDCBPO00560 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SDCBPO00560 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDCBPO00560 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
SDCBPO00560 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC14.85□□□□□ -0.03
SDCBPO00560 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC14.85□□□□□ -0.03
SDCBPO00560 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SDCBPO00560 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDCBPO00560 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDCBPO00560 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDCBPO00560 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDCBPO00560 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC14.85□□□□□ -0.03
SDCBPO00560 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms