Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXN3O00409 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXN3O00409 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXN3O00409 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXN3O00409 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
FOXN3O00409 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.67■□□□□ 0.58
FOXN3O00409 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXN3O00409 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXN3O00409 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
FOXN3O00409 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXN3O00409 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
FOXN3O00409 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXN3O00409 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXN3O00409 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
FOXN3O00409 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXN3O00409 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXN3O00409 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
FOXN3O00409 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXN3O00409 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC18.67■□□□□ 0.58
FOXN3O00409 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
FOXN3O00409 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC18.67■□□□□ 0.58
FOXN3O00409 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.67■□□□□ 0.58
FOXN3O00409 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.67■□□□□ 0.58
FOXN3O00409 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC18.67■□□□□ 0.58
FOXN3O00409 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.67■□□□□ 0.58
FOXN3O00409 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
FOXN3O00409 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
FOXN3O00409 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
FOXN3O00409 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.67■□□□□ 0.58
FOXN3O00409 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
FOXN3O00409 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXN3O00409 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
FOXN3O00409 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXN3O00409 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXN3O00409 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.66■□□□□ 0.58
FOXN3O00409 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXN3O00409 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXN3O00409 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
FOXN3O00409 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC18.66■□□□□ 0.58
FOXN3O00409 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXN3O00409 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.66■□□□□ 0.58
FOXN3O00409 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXN3O00409 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXN3O00409 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
FOXN3O00409 AC104819.1-201ENST00000504587 486 ntBASIC18.66■□□□□ 0.58
FOXN3O00409 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.66■□□□□ 0.58
FOXN3O00409 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.66■□□□□ 0.58
FOXN3O00409 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
FOXN3O00409 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC18.66■□□□□ 0.58
FOXN3O00409 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
FOXN3O00409 AC009336.1-201ENST00000608941 1553 ntBASIC18.66■□□□□ 0.58
FOXN3O00409 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
FOXN3O00409 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXN3O00409 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
FOXN3O00409 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXN3O00409 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXN3O00409 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXN3O00409 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXN3O00409 LINC02012-201ENST00000608206 1725 ntBASIC18.66■□□□□ 0.58
FOXN3O00409 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
FOXN3O00409 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXN3O00409 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXN3O00409 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
FOXN3O00409 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
FOXN3O00409 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXN3O00409 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXN3O00409 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.65■□□□□ 0.58
FOXN3O00409 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXN3O00409 AC092053.1-201ENST00000605787 1936 ntBASIC18.65■□□□□ 0.58
FOXN3O00409 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18.65■□□□□ 0.58
FOXN3O00409 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
FOXN3O00409 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
FOXN3O00409 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.65■□□□□ 0.58
FOXN3O00409 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
FOXN3O00409 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.65■□□□□ 0.58
FOXN3O00409 POM121L3P-201ENST00000419331 1163 ntBASIC18.65■□□□□ 0.58
FOXN3O00409 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXN3O00409 STK19B-204ENST00000512515 211 ntBASIC18.65■□□□□ 0.58
FOXN3O00409 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
FOXN3O00409 AC012615.1-201ENST00000565797 1299 ntBASIC18.65■□□□□ 0.58
FOXN3O00409 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC18.65■□□□□ 0.58
FOXN3O00409 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.65■□□□□ 0.58
FOXN3O00409 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.65■□□□□ 0.58
FOXN3O00409 AC093458.2-201ENST00000623150 629 ntBASIC18.65■□□□□ 0.58
FOXN3O00409 AC073592.5-201ENST00000624854 528 ntBASIC18.65■□□□□ 0.58
FOXN3O00409 AL135999.2-201ENST00000622438 1686 ntBASIC18.65■□□□□ 0.58
FOXN3O00409 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXN3O00409 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXN3O00409 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
FOXN3O00409 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC18.65■□□□□ 0.58
FOXN3O00409 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXN3O00409 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXN3O00409 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
FOXN3O00409 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
FOXN3O00409 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.65■□□□□ 0.58
FOXN3O00409 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
FOXN3O00409 PMPCAP1-201ENST00000508114 1576 ntBASIC18.64■□□□□ 0.58
FOXN3O00409 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC18.64■□□□□ 0.58
FOXN3O00409 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
FOXN3O00409 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms