Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.17■□□□□ 0.34
TMX2-CTNND1H3BSU7 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TMX2-CTNND1H3BSU7 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.17■□□□□ 0.34
TMX2-CTNND1H3BSU7 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TMX2-CTNND1H3BSU7 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 AC011676.5-201ENST00000624864 2660 ntBASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 SART3-203ENST00000546611 1184 ntBASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 PP12613-201ENST00000424958 2230 ntBASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
TMX2-CTNND1H3BSU7 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 UBALD1-205ENST00000590891 2641 ntBASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 RPS2P1-201ENST00000434010 821 ntBASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 IGHV3-22-201ENST00000520721 359 ntBASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TMX2-CTNND1H3BSU7 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
TMX2-CTNND1H3BSU7 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.14■□□□□ 0.34
TMX2-CTNND1H3BSU7 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 NKILA-202ENST00000614771 2598 ntBASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms