Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 AL441883.1-201ENST00000566170 1045 ntBASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 AL353692.3-201ENST00000407031 1396 ntBASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM49D1C9J1S8 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 AC093525.9-201ENST00000624961 1746 ntBASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 AC096633.1-201ENST00000422446 749 ntBASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 AC068472.1-201ENST00000474589 881 ntBASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 AC002558.1-201ENST00000488906 803 ntBASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM49D1C9J1S8 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 AP003733.1-201ENST00000491725 852 ntBASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
TRIM49D1C9J1S8 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 AC092597.1-201ENST00000487352 616 ntBASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
TRIM49D1C9J1S8 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms