Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HIF3AQ9Y2N7 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
HIF3AQ9Y2N7 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HIF3AQ9Y2N7 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC15.79■□□□□ 0.12
HIF3AQ9Y2N7 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
HIF3AQ9Y2N7 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HIF3AQ9Y2N7 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
HIF3AQ9Y2N7 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HIF3AQ9Y2N7 PCDHA12-202ENST00000613593 2588 ntBASIC15.79■□□□□ 0.12
HIF3AQ9Y2N7 AC022211.2-201ENST00000585075 2527 ntBASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 MED25-212ENST00000618715 1467 ntTSL 5 BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 AC122714.2-201ENST00000502787 707 ntBASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 AC005336.2-201ENST00000593183 939 ntBASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 NDUFV2-AS1-203ENST00000608008 779 ntBASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 IGHV3-41-201ENST00000613121 348 ntBASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HIF3AQ9Y2N7 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 AC246785.2-201ENST00000432512 513 ntBASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 IGHV3-52-201ENST00000519770 353 ntBASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 CD320-202ENST00000537716 1119 ntTSL 2 BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 AC011840.4-201ENST00000578471 627 ntBASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 AL121956.5-201ENST00000625261 221 ntBASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HIF3AQ9Y2N7 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
HIF3AQ9Y2N7 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
HIF3AQ9Y2N7 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC15.77■□□□□ 0.11
HIF3AQ9Y2N7 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
HIF3AQ9Y2N7 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
HIF3AQ9Y2N7 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
HIF3AQ9Y2N7 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
HIF3AQ9Y2N7 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC15.77■□□□□ 0.11
HIF3AQ9Y2N7 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
HIF3AQ9Y2N7 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
HIF3AQ9Y2N7 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
HIF3AQ9Y2N7 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
HIF3AQ9Y2N7 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC15.77■□□□□ 0.11
HIF3AQ9Y2N7 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC15.76■□□□□ 0.11
HIF3AQ9Y2N7 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HIF3AQ9Y2N7 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
HIF3AQ9Y2N7 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HIF3AQ9Y2N7 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
HIF3AQ9Y2N7 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC15.76■□□□□ 0.11
HIF3AQ9Y2N7 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
HIF3AQ9Y2N7 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HIF3AQ9Y2N7 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms