Protein–RNA interactions for Protein: Q9Y2J0

RPH3A, Rabphilin-3A, humanhuman

Predicted RBP Predictions only

Length 694 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPH3AQ9Y2J0 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 INTS4P1-201ENST00000438455 1935 ntBASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 AC132008.2-207ENST00000454517 770 ntBASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 EMBP1-201ENST00000458200 901 ntBASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 AL160237.2-201ENST00000556165 472 ntBASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 AL031008.1-201ENST00000619963 541 ntBASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.06■□□□□ 0.16
RPH3AQ9Y2J0 SIRPAP1-201ENST00000448467 1770 ntBASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RPH3AQ9Y2J0 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 AC067852.2-201ENST00000590513 2313 ntBASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.04■□□□□ 0.16
RPH3AQ9Y2J0 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
RPH3AQ9Y2J0 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
RPH3AQ9Y2J0 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms