Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SSX2IPQ9Y2D8 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SSX2IPQ9Y2D8 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SSX2IPQ9Y2D8 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SSX2IPQ9Y2D8 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.79■□□□□ 0.6
SSX2IPQ9Y2D8 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
SSX2IPQ9Y2D8 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC18.79■□□□□ 0.6
SSX2IPQ9Y2D8 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SSX2IPQ9Y2D8 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.79■□□□□ 0.6
SSX2IPQ9Y2D8 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.79■□□□□ 0.6
SSX2IPQ9Y2D8 AC002347.1-201ENST00000569543 541 ntBASIC18.79■□□□□ 0.6
SSX2IPQ9Y2D8 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SSX2IPQ9Y2D8 AL691403.2-201ENST00000618460 490 ntBASIC18.79■□□□□ 0.6
SSX2IPQ9Y2D8 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.79■□□□□ 0.6
SSX2IPQ9Y2D8 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SSX2IPQ9Y2D8 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SSX2IPQ9Y2D8 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SSX2IPQ9Y2D8 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.79■□□□□ 0.6
SSX2IPQ9Y2D8 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.79■□□□□ 0.6
SSX2IPQ9Y2D8 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.79■□□□□ 0.6
SSX2IPQ9Y2D8 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SSX2IPQ9Y2D8 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.79■□□□□ 0.6
SSX2IPQ9Y2D8 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
SSX2IPQ9Y2D8 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SSX2IPQ9Y2D8 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SSX2IPQ9Y2D8 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 AL353593.2-201ENST00000602529 1483 ntBASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 AP000997.3-201ENST00000623333 2250 ntBASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 AC073621.1-201ENST00000392730 636 ntBASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 YBX2P1-201ENST00000394192 760 ntBASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 RPSAP43-201ENST00000402237 625 ntBASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 AC004832.2-201ENST00000426397 482 ntBASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 OR6D1P-203ENST00000641209 4860 ntBASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.78■□□□□ 0.6
SSX2IPQ9Y2D8 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 GPX1P2-201ENST00000429271 606 ntBASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 MTDHP5-201ENST00000598980 586 ntBASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSX2IPQ9Y2D8 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
SSX2IPQ9Y2D8 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
SSX2IPQ9Y2D8 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.76■□□□□ 0.59
SSX2IPQ9Y2D8 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.76■□□□□ 0.59
SSX2IPQ9Y2D8 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
SSX2IPQ9Y2D8 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SSX2IPQ9Y2D8 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.76■□□□□ 0.59
SSX2IPQ9Y2D8 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SSX2IPQ9Y2D8 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.76■□□□□ 0.59
SSX2IPQ9Y2D8 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SSX2IPQ9Y2D8 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SSX2IPQ9Y2D8 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SSX2IPQ9Y2D8 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.76■□□□□ 0.59
SSX2IPQ9Y2D8 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms