Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
LIMCH1Q9UPQ0 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIMCH1Q9UPQ0 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMCH1Q9UPQ0 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC20.56■□□□□ 0.88
LIMCH1Q9UPQ0 MED25-212ENST00000618715 1467 ntTSL 5 BASIC20.56■□□□□ 0.88
LIMCH1Q9UPQ0 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC20.56■□□□□ 0.88
LIMCH1Q9UPQ0 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC20.56■□□□□ 0.88
LIMCH1Q9UPQ0 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMCH1Q9UPQ0 KRT8P10-201ENST00000450021 1447 ntBASIC20.56■□□□□ 0.88
LIMCH1Q9UPQ0 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LIMCH1Q9UPQ0 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMCH1Q9UPQ0 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMCH1Q9UPQ0 FAM220CP-201ENST00000395253 831 ntBASIC20.56■□□□□ 0.88
LIMCH1Q9UPQ0 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC20.56■□□□□ 0.88
LIMCH1Q9UPQ0 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMCH1Q9UPQ0 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LIMCH1Q9UPQ0 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC20.56■□□□□ 0.88
LIMCH1Q9UPQ0 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC20.56■□□□□ 0.88
LIMCH1Q9UPQ0 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC20.56■□□□□ 0.88
LIMCH1Q9UPQ0 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMCH1Q9UPQ0 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC20.56■□□□□ 0.88
LIMCH1Q9UPQ0 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMCH1Q9UPQ0 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC20.56■□□□□ 0.88
LIMCH1Q9UPQ0 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMCH1Q9UPQ0 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LIMCH1Q9UPQ0 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LIMCH1Q9UPQ0 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC20.55■□□□□ 0.88
LIMCH1Q9UPQ0 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMCH1Q9UPQ0 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMCH1Q9UPQ0 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LIMCH1Q9UPQ0 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LIMCH1Q9UPQ0 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
LIMCH1Q9UPQ0 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMCH1Q9UPQ0 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMCH1Q9UPQ0 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMCH1Q9UPQ0 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMCH1Q9UPQ0 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMCH1Q9UPQ0 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMCH1Q9UPQ0 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC20.55■□□□□ 0.88
LIMCH1Q9UPQ0 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMCH1Q9UPQ0 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.55■□□□□ 0.88
LIMCH1Q9UPQ0 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC20.55■□□□□ 0.88
LIMCH1Q9UPQ0 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LIMCH1Q9UPQ0 MEG3-211ENST00000452514 461 ntTSL 3 BASIC20.55■□□□□ 0.88
LIMCH1Q9UPQ0 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMCH1Q9UPQ0 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMCH1Q9UPQ0 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LIMCH1Q9UPQ0 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
LIMCH1Q9UPQ0 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMCH1Q9UPQ0 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 ENSA-206ENST00000361631 725 ntTSL 2 BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 AC111152.3-201ENST00000569699 673 ntBASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC20.54■□□□□ 0.88
LIMCH1Q9UPQ0 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC20.53■□□□□ 0.88
LIMCH1Q9UPQ0 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.53■□□□□ 0.88
LIMCH1Q9UPQ0 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMCH1Q9UPQ0 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
LIMCH1Q9UPQ0 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC20.53■□□□□ 0.88
LIMCH1Q9UPQ0 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LIMCH1Q9UPQ0 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMCH1Q9UPQ0 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC20.53■□□□□ 0.88
LIMCH1Q9UPQ0 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LIMCH1Q9UPQ0 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMCH1Q9UPQ0 AC105020.1-201ENST00000435356 2205 ntBASIC20.53■□□□□ 0.88
LIMCH1Q9UPQ0 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMCH1Q9UPQ0 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMCH1Q9UPQ0 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LIMCH1Q9UPQ0 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMCH1Q9UPQ0 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMCH1Q9UPQ0 AL031133.1-201ENST00000406807 723 ntBASIC20.53■□□□□ 0.88
LIMCH1Q9UPQ0 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC20.53■□□□□ 0.88
LIMCH1Q9UPQ0 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC20.53■□□□□ 0.88
LIMCH1Q9UPQ0 AC246785.2-201ENST00000432512 513 ntBASIC20.53■□□□□ 0.88
LIMCH1Q9UPQ0 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.53■□□□□ 0.88
LIMCH1Q9UPQ0 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms