Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 KLF4P1-201ENST00000412782 1185 ntBASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 STK19B-204ENST00000512515 211 ntBASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 AC003669.1-201ENST00000334569 611 ntBASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 KRT16P4-201ENST00000453883 522 ntBASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 AL591684.3-201ENST00000605187 298 ntBASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 AC009336.1-201ENST00000608941 1553 ntBASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
AP4E1Q9UPM8 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 ENSA-206ENST00000361631 725 ntTSL 2 BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 NUS1P1-201ENST00000446295 882 ntBASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 PMPCAP1-201ENST00000508114 1576 ntBASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
AP4E1Q9UPM8 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
AP4E1Q9UPM8 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
AP4E1Q9UPM8 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
AP4E1Q9UPM8 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
AP4E1Q9UPM8 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
AP4E1Q9UPM8 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
AP4E1Q9UPM8 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
AP4E1Q9UPM8 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
AP4E1Q9UPM8 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
AP4E1Q9UPM8 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
AP4E1Q9UPM8 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms