Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 AC009053.2-201ENST00000563701 2365 ntBASIC16.94■□□□□ 0.3
VPS4AQ9UN37 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 AL353801.3-201ENST00000609898 542 ntBASIC16.94■□□□□ 0.3
VPS4AQ9UN37 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 AC133963.1-201ENST00000504166 1679 ntBASIC16.94■□□□□ 0.3
VPS4AQ9UN37 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4AQ9UN37 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 LINC00602-201ENST00000629776 2065 ntBASIC16.93■□□□□ 0.3
VPS4AQ9UN37 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 AL023806.1-201ENST00000603994 1649 ntBASIC16.93■□□□□ 0.3
VPS4AQ9UN37 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 MIR662-201ENST00000384847 95 ntBASIC16.93■□□□□ 0.3
VPS4AQ9UN37 MRPL3P1-201ENST00000400109 1033 ntBASIC16.93■□□□□ 0.3
VPS4AQ9UN37 HLA-F-220ENST00000434407 884 ntBASIC16.93■□□□□ 0.3
VPS4AQ9UN37 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 AC074051.2-201ENST00000565115 352 ntBASIC16.93■□□□□ 0.3
VPS4AQ9UN37 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.93■□□□□ 0.3
VPS4AQ9UN37 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
VPS4AQ9UN37 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms