Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 AC006557.2-201ENST00000592985 1240 ntBASIC18.63■□□□□ 0.57
SIX4Q9UIU6 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC18.63■□□□□ 0.57
SIX4Q9UIU6 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SIX4Q9UIU6 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX4Q9UIU6 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SIX4Q9UIU6 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SIX4Q9UIU6 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SIX4Q9UIU6 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.61■□□□□ 0.57
SIX4Q9UIU6 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC18.61■□□□□ 0.57
SIX4Q9UIU6 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.61■□□□□ 0.57
SIX4Q9UIU6 AC141586.5-201ENST00000624546 2050 ntBASIC18.61■□□□□ 0.57
SIX4Q9UIU6 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SIX4Q9UIU6 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
SIX4Q9UIU6 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SIX4Q9UIU6 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SIX4Q9UIU6 AC016396.2-201ENST00000562575 1417 ntBASIC18.61■□□□□ 0.57
SIX4Q9UIU6 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SIX4Q9UIU6 IL9RP2-201ENST00000423948 1312 ntBASIC18.61■□□□□ 0.57
SIX4Q9UIU6 AL590787.1-201ENST00000568856 1315 ntBASIC18.61■□□□□ 0.57
SIX4Q9UIU6 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SIX4Q9UIU6 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.61■□□□□ 0.57
SIX4Q9UIU6 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC18.61■□□□□ 0.57
SIX4Q9UIU6 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.61■□□□□ 0.57
SIX4Q9UIU6 AC092910.1-201ENST00000482027 1129 ntBASIC18.61■□□□□ 0.57
SIX4Q9UIU6 IGHV3-22-201ENST00000520721 359 ntBASIC18.61■□□□□ 0.57
SIX4Q9UIU6 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.61■□□□□ 0.57
SIX4Q9UIU6 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC18.61■□□□□ 0.57
SIX4Q9UIU6 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
SIX4Q9UIU6 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18.61■□□□□ 0.57
SIX4Q9UIU6 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC18.61■□□□□ 0.57
SIX4Q9UIU6 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.61■□□□□ 0.57
SIX4Q9UIU6 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SIX4Q9UIU6 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SIX4Q9UIU6 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.61■□□□□ 0.57
SIX4Q9UIU6 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.6■□□□□ 0.57
SIX4Q9UIU6 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.6■□□□□ 0.57
SIX4Q9UIU6 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX4Q9UIU6 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX4Q9UIU6 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
SIX4Q9UIU6 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX4Q9UIU6 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.6■□□□□ 0.57
SIX4Q9UIU6 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.6■□□□□ 0.57
SIX4Q9UIU6 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX4Q9UIU6 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.6■□□□□ 0.57
SIX4Q9UIU6 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.6■□□□□ 0.57
SIX4Q9UIU6 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX4Q9UIU6 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SIX4Q9UIU6 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX4Q9UIU6 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.6■□□□□ 0.57
SIX4Q9UIU6 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX4Q9UIU6 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX4Q9UIU6 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.6■□□□□ 0.57
SIX4Q9UIU6 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.6■□□□□ 0.57
SIX4Q9UIU6 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX4Q9UIU6 AL590627.1-203ENST00000421194 1026 ntBASIC18.6■□□□□ 0.57
SIX4Q9UIU6 AC098831.1-202ENST00000438821 336 ntBASIC18.6■□□□□ 0.57
SIX4Q9UIU6 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.6■□□□□ 0.57
SIX4Q9UIU6 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.6■□□□□ 0.57
SIX4Q9UIU6 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.6■□□□□ 0.57
SIX4Q9UIU6 AL356488.2-201ENST00000602755 427 ntBASIC18.6■□□□□ 0.57
SIX4Q9UIU6 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC18.6■□□□□ 0.57
SIX4Q9UIU6 BX640515.1-201ENST00000617215 977 ntBASIC18.6■□□□□ 0.57
SIX4Q9UIU6 AC117500.6-201ENST00000624871 588 ntBASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms