Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 AC116353.5-201ENST00000638148 1699 ntBASIC13.51□□□□□ -0.25
CCDC140Q96MF4 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 PRELID1P1-202ENST00000567272 903 ntBASIC13.51□□□□□ -0.25
CCDC140Q96MF4 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 PRR29-207ENST00000580752 458 ntTSL 3 BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 AP000867.4-201ENST00000641616 219 ntBASIC13.51□□□□□ -0.25
CCDC140Q96MF4 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 MED16-201ENST00000269814 1199 ntTSL 5 BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 SRP19-202ENST00000445150 833 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 ABCD1P5-201ENST00000445663 754 ntBASIC13.5□□□□□ -0.25
CCDC140Q96MF4 RBSN-204ENST00000449050 903 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 AL732292.2-201ENST00000609649 430 ntBASIC13.5□□□□□ -0.25
CCDC140Q96MF4 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 AC012313.1-201ENST00000593393 3059 ntBASIC13.5□□□□□ -0.25
CCDC140Q96MF4 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC140Q96MF4 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 AP001094.4-201ENST00000579008 2176 ntBASIC13.49□□□□□ -0.25
CCDC140Q96MF4 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 SOD2-201ENST00000337404 991 ntTSL 2 BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 EMD-201ENST00000369835 966 ntTSL 3 BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 SLC25A1P3-201ENST00000395415 828 ntBASIC13.49□□□□□ -0.25
CCDC140Q96MF4 SPDYE21P-201ENST00000413323 827 ntBASIC13.49□□□□□ -0.25
CCDC140Q96MF4 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC13.49□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms