Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC19.35■□□□□ 0.69
HPS3Q969F9 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HPS3Q969F9 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HPS3Q969F9 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.35■□□□□ 0.69
HPS3Q969F9 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HPS3Q969F9 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HPS3Q969F9 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
HPS3Q969F9 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HPS3Q969F9 AC046185.3-201ENST00000623228 1824 ntBASIC19.35■□□□□ 0.69
HPS3Q969F9 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HPS3Q969F9 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HPS3Q969F9 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC19.34■□□□□ 0.69
HPS3Q969F9 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC19.34■□□□□ 0.69
HPS3Q969F9 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HPS3Q969F9 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HPS3Q969F9 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
HPS3Q969F9 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HPS3Q969F9 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HPS3Q969F9 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HPS3Q969F9 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.34■□□□□ 0.69
HPS3Q969F9 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
HPS3Q969F9 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
HPS3Q969F9 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC19.34■□□□□ 0.69
HPS3Q969F9 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HPS3Q969F9 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HPS3Q969F9 AC103564.2-201ENST00000432853 1299 ntBASIC19.34■□□□□ 0.69
HPS3Q969F9 DANCR-204ENST00000444958 709 ntTSL 3 BASIC19.34■□□□□ 0.69
HPS3Q969F9 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.34■□□□□ 0.69
HPS3Q969F9 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
HPS3Q969F9 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC19.34■□□□□ 0.69
HPS3Q969F9 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
HPS3Q969F9 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HPS3Q969F9 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HPS3Q969F9 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC19.34■□□□□ 0.69
HPS3Q969F9 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HPS3Q969F9 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HPS3Q969F9 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HPS3Q969F9 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
HPS3Q969F9 AC090340.1-201ENST00000620778 4980 ntBASIC19.34■□□□□ 0.69
HPS3Q969F9 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
HPS3Q969F9 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HPS3Q969F9 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HPS3Q969F9 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC19.33■□□□□ 0.69
HPS3Q969F9 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HPS3Q969F9 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
HPS3Q969F9 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HPS3Q969F9 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HPS3Q969F9 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HPS3Q969F9 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
HPS3Q969F9 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
HPS3Q969F9 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC19.33■□□□□ 0.69
HPS3Q969F9 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
HPS3Q969F9 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HPS3Q969F9 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HPS3Q969F9 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HPS3Q969F9 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC19.33■□□□□ 0.68
HPS3Q969F9 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
HPS3Q969F9 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HPS3Q969F9 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC19.33■□□□□ 0.68
HPS3Q969F9 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC19.33■□□□□ 0.68
HPS3Q969F9 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC19.33■□□□□ 0.68
HPS3Q969F9 FICD-205ENST00000552758 603 ntTSL 2 BASIC19.33■□□□□ 0.68
HPS3Q969F9 MIR5100-201ENST00000579544 119 ntBASIC19.33■□□□□ 0.68
HPS3Q969F9 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC19.33■□□□□ 0.68
HPS3Q969F9 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC19.33■□□□□ 0.68
HPS3Q969F9 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.33■□□□□ 0.68
HPS3Q969F9 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC19.33■□□□□ 0.68
HPS3Q969F9 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
HPS3Q969F9 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HPS3Q969F9 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
HPS3Q969F9 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HPS3Q969F9 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HPS3Q969F9 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
HPS3Q969F9 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC19.33■□□□□ 0.68
HPS3Q969F9 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC19.33■□□□□ 0.68
HPS3Q969F9 AC116353.5-201ENST00000638148 1699 ntBASIC19.33■□□□□ 0.68
HPS3Q969F9 AC009053.2-201ENST00000563701 2365 ntBASIC19.33■□□□□ 0.68
HPS3Q969F9 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HPS3Q969F9 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC19.33■□□□□ 0.68
HPS3Q969F9 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
HPS3Q969F9 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC19.33■□□□□ 0.68
HPS3Q969F9 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
HPS3Q969F9 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
HPS3Q969F9 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HPS3Q969F9 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HPS3Q969F9 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
HPS3Q969F9 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC19.32■□□□□ 0.68
HPS3Q969F9 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HPS3Q969F9 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC19.32■□□□□ 0.68
HPS3Q969F9 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HPS3Q969F9 THAP5-204ENST00000438865 868 ntTSL 2 BASIC19.32■□□□□ 0.68
HPS3Q969F9 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC19.32■□□□□ 0.68
HPS3Q969F9 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC19.32■□□□□ 0.68
HPS3Q969F9 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC19.32■□□□□ 0.68
HPS3Q969F9 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HPS3Q969F9 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC19.32■□□□□ 0.68
HPS3Q969F9 AC012313.10-201ENST00000623509 926 ntBASIC19.32■□□□□ 0.68
HPS3Q969F9 AC073592.5-201ENST00000624854 528 ntBASIC19.32■□□□□ 0.68
HPS3Q969F9 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HPS3Q969F9 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms