Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 AC079781.5-202ENST00000641784 3743 ntBASIC5.41□□□□□ -1.54
SYNE1Q8NF91 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 MED16-201ENST00000269814 1199 ntTSL 5 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 AL139424.1-201ENST00000607572 797 ntBASIC5.41□□□□□ -1.54
SYNE1Q8NF91 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 PMS2P7-201ENST00000506558 1336 ntBASIC5.41□□□□□ -1.54
SYNE1Q8NF91 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 THAP5-204ENST00000438865 868 ntTSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 ELP6-205ENST00000439305 880 ntTSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 KRT8P47-201ENST00000604727 1398 ntBASIC5.41□□□□□ -1.54
SYNE1Q8NF91 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 USP49-202ENST00000373010 2446 ntTSL 5 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 SP100-208ENST00000427101 1922 ntTSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 ASL-204ENST00000395331 1538 ntTSL 5 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 COX5A-206ENST00000568783 571 ntTSL 3 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 NUS1P2-201ENST00000417358 873 ntBASIC5.41□□□□□ -1.54
SYNE1Q8NF91 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 AC009113.1-201ENST00000570267 2443 ntBASIC5.41□□□□□ -1.54
SYNE1Q8NF91 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms