Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.06■□□□□ 0.32
VRK3Q8IV63 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VRK3Q8IV63 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VRK3Q8IV63 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VRK3Q8IV63 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VRK3Q8IV63 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VRK3Q8IV63 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VRK3Q8IV63 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VRK3Q8IV63 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC17.06■□□□□ 0.32
VRK3Q8IV63 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.06■□□□□ 0.32
VRK3Q8IV63 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VRK3Q8IV63 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VRK3Q8IV63 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VRK3Q8IV63 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
VRK3Q8IV63 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.06■□□□□ 0.32
VRK3Q8IV63 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.06■□□□□ 0.32
VRK3Q8IV63 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
VRK3Q8IV63 AL450487.1-201ENST00000426799 995 ntBASIC17.06■□□□□ 0.32
VRK3Q8IV63 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
VRK3Q8IV63 SAPCD2P3-201ENST00000455031 850 ntBASIC17.06■□□□□ 0.32
VRK3Q8IV63 FGFR3P6-201ENST00000457012 610 ntBASIC17.06■□□□□ 0.32
VRK3Q8IV63 BX005266.1-201ENST00000473402 457 ntBASIC17.06■□□□□ 0.32
VRK3Q8IV63 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VRK3Q8IV63 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VRK3Q8IV63 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.06■□□□□ 0.32
VRK3Q8IV63 AC008608.2-201ENST00000606089 416 ntBASIC17.06■□□□□ 0.32
VRK3Q8IV63 AC073592.4-201ENST00000623827 446 ntBASIC17.06■□□□□ 0.32
VRK3Q8IV63 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VRK3Q8IV63 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
VRK3Q8IV63 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.06■□□□□ 0.32
VRK3Q8IV63 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VRK3Q8IV63 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VRK3Q8IV63 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.06■□□□□ 0.32
VRK3Q8IV63 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.06■□□□□ 0.32
VRK3Q8IV63 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VRK3Q8IV63 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.06■□□□□ 0.32
VRK3Q8IV63 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
VRK3Q8IV63 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
VRK3Q8IV63 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VRK3Q8IV63 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
VRK3Q8IV63 SIGLEC16-201ENST00000599858 1437 ntBASIC17.05■□□□□ 0.32
VRK3Q8IV63 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VRK3Q8IV63 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VRK3Q8IV63 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VRK3Q8IV63 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
VRK3Q8IV63 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
VRK3Q8IV63 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
VRK3Q8IV63 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
VRK3Q8IV63 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
VRK3Q8IV63 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.05■□□□□ 0.32
VRK3Q8IV63 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VRK3Q8IV63 SLC25A1P3-201ENST00000395415 828 ntBASIC17.05■□□□□ 0.32
VRK3Q8IV63 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.05■□□□□ 0.32
VRK3Q8IV63 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.05■□□□□ 0.32
VRK3Q8IV63 RBM17P3-201ENST00000417687 1192 ntBASIC17.05■□□□□ 0.32
VRK3Q8IV63 AL020989.1-201ENST00000422979 469 ntBASIC17.05■□□□□ 0.32
VRK3Q8IV63 KRT126P-201ENST00000549467 1181 ntBASIC17.05■□□□□ 0.32
VRK3Q8IV63 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.05■□□□□ 0.32
VRK3Q8IV63 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.05■□□□□ 0.32
VRK3Q8IV63 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.05■□□□□ 0.32
VRK3Q8IV63 NKAPP1-205ENST00000585790 367 ntBASIC17.05■□□□□ 0.32
VRK3Q8IV63 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VRK3Q8IV63 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VRK3Q8IV63 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VRK3Q8IV63 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VRK3Q8IV63 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
VRK3Q8IV63 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.05■□□□□ 0.32
VRK3Q8IV63 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VRK3Q8IV63 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
VRK3Q8IV63 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.05■□□□□ 0.32
VRK3Q8IV63 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VRK3Q8IV63 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VRK3Q8IV63 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VRK3Q8IV63 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VRK3Q8IV63 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VRK3Q8IV63 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.04■□□□□ 0.32
VRK3Q8IV63 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VRK3Q8IV63 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VRK3Q8IV63 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.04■□□□□ 0.32
VRK3Q8IV63 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
VRK3Q8IV63 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
VRK3Q8IV63 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VRK3Q8IV63 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VRK3Q8IV63 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
VRK3Q8IV63 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
VRK3Q8IV63 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VRK3Q8IV63 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.04■□□□□ 0.32
VRK3Q8IV63 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
VRK3Q8IV63 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC17.04■□□□□ 0.32
VRK3Q8IV63 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC17.04■□□□□ 0.32
VRK3Q8IV63 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC17.04■□□□□ 0.32
VRK3Q8IV63 SART3-203ENST00000546611 1184 ntBASIC17.04■□□□□ 0.32
VRK3Q8IV63 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.04■□□□□ 0.32
VRK3Q8IV63 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.04■□□□□ 0.32
VRK3Q8IV63 LINC01711-201ENST00000598340 967 ntBASIC17.04■□□□□ 0.32
VRK3Q8IV63 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.04■□□□□ 0.32
VRK3Q8IV63 AL691432.3-201ENST00000621860 400 ntBASIC17.04■□□□□ 0.32
VRK3Q8IV63 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.04■□□□□ 0.32
VRK3Q8IV63 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VRK3Q8IV63 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms