Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.72■□□□□ 0.27
CLDN6P56747 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.72■□□□□ 0.27
CLDN6P56747 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
CLDN6P56747 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.72■□□□□ 0.27
CLDN6P56747 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.72■□□□□ 0.27
CLDN6P56747 LSM12-202ENST00000585388 942 ntTSL 3 BASIC16.72■□□□□ 0.27
CLDN6P56747 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.72■□□□□ 0.27
CLDN6P56747 AC105339.1-204ENST00000636249 355 ntBASIC16.72■□□□□ 0.27
CLDN6P56747 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CLDN6P56747 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
CLDN6P56747 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLDN6P56747 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CLDN6P56747 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLDN6P56747 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLDN6P56747 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CLDN6P56747 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLDN6P56747 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLDN6P56747 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.72■□□□□ 0.27
CLDN6P56747 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CLDN6P56747 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLDN6P56747 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC16.71■□□□□ 0.27
CLDN6P56747 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLDN6P56747 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC16.71■□□□□ 0.27
CLDN6P56747 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CLDN6P56747 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLDN6P56747 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.27
CLDN6P56747 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLDN6P56747 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLDN6P56747 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLDN6P56747 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.71■□□□□ 0.27
CLDN6P56747 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.71■□□□□ 0.27
CLDN6P56747 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLDN6P56747 AC244107.1-201ENST00000442033 332 ntBASIC16.71■□□□□ 0.27
CLDN6P56747 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.71■□□□□ 0.27
CLDN6P56747 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
CLDN6P56747 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.71■□□□□ 0.27
CLDN6P56747 AC023141.13-201ENST00000604991 943 ntBASIC16.71■□□□□ 0.27
CLDN6P56747 AL353135.1-201ENST00000606729 504 ntBASIC16.71■□□□□ 0.27
CLDN6P56747 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLDN6P56747 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLDN6P56747 AC006116.8-202ENST00000587620 1550 ntBASIC16.71■□□□□ 0.27
CLDN6P56747 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLDN6P56747 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.71■□□□□ 0.27
CLDN6P56747 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLDN6P56747 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLDN6P56747 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.26
CLDN6P56747 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CLDN6P56747 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLDN6P56747 PI4KAP1-204ENST00000612579 1703 ntBASIC16.7■□□□□ 0.26
CLDN6P56747 AC009949.1-201ENST00000623048 1830 ntBASIC16.7■□□□□ 0.26
CLDN6P56747 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.7■□□□□ 0.26
CLDN6P56747 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC16.7■□□□□ 0.26
CLDN6P56747 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLDN6P56747 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLDN6P56747 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLDN6P56747 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLDN6P56747 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLDN6P56747 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.7■□□□□ 0.26
CLDN6P56747 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLDN6P56747 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLDN6P56747 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC16.7■□□□□ 0.26
CLDN6P56747 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLDN6P56747 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
CLDN6P56747 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLDN6P56747 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC16.7■□□□□ 0.26
CLDN6P56747 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.7■□□□□ 0.26
CLDN6P56747 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.7■□□□□ 0.26
CLDN6P56747 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.7■□□□□ 0.26
CLDN6P56747 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.7■□□□□ 0.26
CLDN6P56747 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLDN6P56747 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.7■□□□□ 0.26
CLDN6P56747 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.7■□□□□ 0.26
CLDN6P56747 MIR4745-201ENST00000577608 62 ntBASIC16.7■□□□□ 0.26
CLDN6P56747 AC138761.1-201ENST00000584393 385 ntBASIC16.7■□□□□ 0.26
CLDN6P56747 AC022145.2-201ENST00000598203 171 ntBASIC16.7■□□□□ 0.26
CLDN6P56747 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.7■□□□□ 0.26
CLDN6P56747 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLDN6P56747 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CLDN6P56747 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLDN6P56747 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLDN6P56747 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLDN6P56747 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLDN6P56747 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLDN6P56747 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLDN6P56747 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLDN6P56747 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC16.7■□□□□ 0.26
CLDN6P56747 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLDN6P56747 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLDN6P56747 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLDN6P56747 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC16.7■□□□□ 0.26
CLDN6P56747 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC16.69■□□□□ 0.26
CLDN6P56747 AL096828.2-201ENST00000567259 1965 ntBASIC16.69■□□□□ 0.26
CLDN6P56747 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLDN6P56747 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.69■□□□□ 0.26
CLDN6P56747 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
CLDN6P56747 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
CLDN6P56747 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLDN6P56747 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
CLDN6P56747 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLDN6P56747 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms