Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A4P53420 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A4P53420 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.53■□□□□ 0.56
COL4A4P53420 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.53■□□□□ 0.56
COL4A4P53420 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.53■□□□□ 0.56
COL4A4P53420 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A4P53420 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A4P53420 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A4P53420 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A4P53420 CENPM-205ENST00000404067 905 ntTSL 3 BASIC18.53■□□□□ 0.56
COL4A4P53420 ACTG1P4-201ENST00000425123 1122 ntBASIC18.53■□□□□ 0.56
COL4A4P53420 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A4P53420 CNN2P2-201ENST00000443536 909 ntBASIC18.53■□□□□ 0.56
COL4A4P53420 CNN2P3-201ENST00000450201 906 ntBASIC18.53■□□□□ 0.56
COL4A4P53420 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC18.53■□□□□ 0.56
COL4A4P53420 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC18.53■□□□□ 0.56
COL4A4P53420 RN7SL204P-201ENST00000582831 262 ntBASIC18.53■□□□□ 0.56
COL4A4P53420 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC18.53■□□□□ 0.56
COL4A4P53420 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC18.53■□□□□ 0.56
COL4A4P53420 AL136317.3-201ENST00000618497 906 ntBASIC18.53■□□□□ 0.56
COL4A4P53420 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
COL4A4P53420 AP001059.3-201ENST00000619053 235 ntBASIC18.53■□□□□ 0.56
COL4A4P53420 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A4P53420 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A4P53420 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A4P53420 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
COL4A4P53420 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC18.53■□□□□ 0.56
COL4A4P53420 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC18.52■□□□□ 0.56
COL4A4P53420 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A4P53420 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
COL4A4P53420 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A4P53420 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A4P53420 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.52■□□□□ 0.56
COL4A4P53420 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC18.52■□□□□ 0.56
COL4A4P53420 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A4P53420 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.52■□□□□ 0.56
COL4A4P53420 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
COL4A4P53420 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A4P53420 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC18.52■□□□□ 0.56
COL4A4P53420 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.56
COL4A4P53420 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A4P53420 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.52■□□□□ 0.56
COL4A4P53420 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A4P53420 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A4P53420 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A4P53420 FALEC-201ENST00000416894 566 ntTSL 3 BASIC18.52■□□□□ 0.56
COL4A4P53420 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC18.52■□□□□ 0.56
COL4A4P53420 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC18.52■□□□□ 0.56
COL4A4P53420 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC18.52■□□□□ 0.56
COL4A4P53420 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC18.52■□□□□ 0.56
COL4A4P53420 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC18.52■□□□□ 0.56
COL4A4P53420 DUT-210ENST00000559935 569 ntTSL 3 BASIC18.52■□□□□ 0.56
COL4A4P53420 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A4P53420 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.52■□□□□ 0.56
COL4A4P53420 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A4P53420 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A4P53420 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL4A4P53420 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL4A4P53420 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
COL4A4P53420 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
COL4A4P53420 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.52■□□□□ 0.55
COL4A4P53420 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
COL4A4P53420 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.52■□□□□ 0.55
COL4A4P53420 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC18.52■□□□□ 0.55
COL4A4P53420 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A4P53420 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.51■□□□□ 0.55
COL4A4P53420 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC18.51■□□□□ 0.55
COL4A4P53420 AC087163.2-201ENST00000457299 853 ntBASIC18.51■□□□□ 0.55
COL4A4P53420 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18.51■□□□□ 0.55
COL4A4P53420 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC18.51■□□□□ 0.55
COL4A4P53420 AL135744.1-201ENST00000565098 629 ntBASIC18.51■□□□□ 0.55
COL4A4P53420 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A4P53420 AL390754.1-201ENST00000619088 582 ntBASIC18.51■□□□□ 0.55
COL4A4P53420 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL4A4P53420 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A4P53420 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL4A4P53420 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A4P53420 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A4P53420 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL4A4P53420 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A4P53420 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A4P53420 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A4P53420 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC18.5■□□□□ 0.55
COL4A4P53420 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
COL4A4P53420 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A4P53420 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
COL4A4P53420 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A4P53420 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC18.5■□□□□ 0.55
COL4A4P53420 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.5■□□□□ 0.55
COL4A4P53420 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A4P53420 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A4P53420 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A4P53420 AL590787.1-201ENST00000568856 1315 ntBASIC18.5■□□□□ 0.55
COL4A4P53420 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A4P53420 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
COL4A4P53420 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
COL4A4P53420 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A4P53420 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.5■□□□□ 0.55
COL4A4P53420 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A4P53420 EDF1-203ENST00000371649 790 ntTSL 2 BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms