Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCNFP41002 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.6■□□□□ 0.41
CCNFP41002 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CCNFP41002 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCNFP41002 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CCNFP41002 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.6■□□□□ 0.41
CCNFP41002 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCNFP41002 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCNFP41002 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCNFP41002 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCNFP41002 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CCNFP41002 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CCNFP41002 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNFP41002 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CCNFP41002 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.59■□□□□ 0.41
CCNFP41002 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
CCNFP41002 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCNFP41002 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CCNFP41002 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNFP41002 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
CCNFP41002 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
CCNFP41002 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.59■□□□□ 0.41
CCNFP41002 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNFP41002 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNFP41002 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNFP41002 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNFP41002 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.59■□□□□ 0.41
CCNFP41002 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.59■□□□□ 0.41
CCNFP41002 ARMC10P1-201ENST00000313754 855 ntBASIC17.59■□□□□ 0.41
CCNFP41002 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNFP41002 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCNFP41002 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.59■□□□□ 0.41
CCNFP41002 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.59■□□□□ 0.41
CCNFP41002 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.59■□□□□ 0.41
CCNFP41002 AL445228.2-201ENST00000605589 952 ntBASIC17.59■□□□□ 0.41
CCNFP41002 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CCNFP41002 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.59■□□□□ 0.41
CCNFP41002 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNFP41002 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNFP41002 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCNFP41002 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNFP41002 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
CCNFP41002 AC105020.1-201ENST00000435356 2205 ntBASIC17.59■□□□□ 0.41
CCNFP41002 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNFP41002 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNFP41002 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.59■□□□□ 0.41
CCNFP41002 AL356309.3-201ENST00000624132 1934 ntBASIC17.59■□□□□ 0.41
CCNFP41002 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
CCNFP41002 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.58■□□□□ 0.41
CCNFP41002 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CCNFP41002 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CCNFP41002 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CCNFP41002 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCNFP41002 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
CCNFP41002 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCNFP41002 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCNFP41002 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.58■□□□□ 0.41
CCNFP41002 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
CCNFP41002 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
CCNFP41002 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCNFP41002 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCNFP41002 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCNFP41002 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.58■□□□□ 0.4
CCNFP41002 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.58■□□□□ 0.4
CCNFP41002 RNF126P1-202ENST00000569893 925 ntBASIC17.58■□□□□ 0.4
CCNFP41002 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.58■□□□□ 0.4
CCNFP41002 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC17.58■□□□□ 0.4
CCNFP41002 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
CCNFP41002 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.58■□□□□ 0.4
CCNFP41002 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCNFP41002 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CCNFP41002 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
CCNFP41002 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCNFP41002 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCNFP41002 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCNFP41002 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCNFP41002 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCNFP41002 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCNFP41002 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
CCNFP41002 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCNFP41002 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.57■□□□□ 0.4
CCNFP41002 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCNFP41002 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCNFP41002 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CCNFP41002 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCNFP41002 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCNFP41002 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCNFP41002 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCNFP41002 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCNFP41002 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCNFP41002 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CCNFP41002 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC17.57■□□□□ 0.4
CCNFP41002 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCNFP41002 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCNFP41002 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCNFP41002 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCNFP41002 SLC25A1P3-201ENST00000395415 828 ntBASIC17.57■□□□□ 0.4
CCNFP41002 PCED1CP-201ENST00000419887 785 ntBASIC17.57■□□□□ 0.4
CCNFP41002 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.57■□□□□ 0.4
CCNFP41002 TSPY22P-201ENST00000427496 604 ntBASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms