Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 CD74-212ENST00000524315 584 ntTSL 5 BASIC17.84■□□□□ 0.45
COL9A1P20849 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.84■□□□□ 0.45
COL9A1P20849 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL9A1P20849 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC17.84■□□□□ 0.45
COL9A1P20849 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.84■□□□□ 0.45
COL9A1P20849 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17.84■□□□□ 0.45
COL9A1P20849 SSH2-210ENST00000582084 560 ntTSL 3 BASIC17.84■□□□□ 0.45
COL9A1P20849 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL9A1P20849 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL9A1P20849 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
COL9A1P20849 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.84■□□□□ 0.45
COL9A1P20849 AC120498.9-201ENST00000339021 3867 ntBASIC17.84■□□□□ 0.45
COL9A1P20849 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL9A1P20849 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
COL9A1P20849 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
COL9A1P20849 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
COL9A1P20849 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL9A1P20849 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL9A1P20849 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.45
COL9A1P20849 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.45
COL9A1P20849 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.83■□□□□ 0.45
COL9A1P20849 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
COL9A1P20849 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
COL9A1P20849 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL9A1P20849 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL9A1P20849 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL9A1P20849 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL9A1P20849 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL9A1P20849 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL9A1P20849 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL9A1P20849 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL9A1P20849 AC098614.1-201ENST00000368528 745 ntBASIC17.83■□□□□ 0.44
COL9A1P20849 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.44
COL9A1P20849 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL9A1P20849 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC17.83■□□□□ 0.44
COL9A1P20849 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
COL9A1P20849 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL9A1P20849 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.83■□□□□ 0.44
COL9A1P20849 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.83■□□□□ 0.44
COL9A1P20849 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC17.83■□□□□ 0.44
COL9A1P20849 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.83■□□□□ 0.44
COL9A1P20849 TP53TG3HP-202ENST00000569755 579 ntBASIC17.83■□□□□ 0.44
COL9A1P20849 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.83■□□□□ 0.44
COL9A1P20849 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL9A1P20849 AC026120.1-201ENST00000611536 926 ntBASIC17.83■□□□□ 0.44
COL9A1P20849 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC17.83■□□□□ 0.44
COL9A1P20849 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL9A1P20849 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL9A1P20849 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL9A1P20849 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL9A1P20849 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL9A1P20849 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL9A1P20849 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL9A1P20849 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL9A1P20849 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL9A1P20849 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL9A1P20849 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL9A1P20849 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL9A1P20849 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.82■□□□□ 0.44
COL9A1P20849 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.82■□□□□ 0.44
COL9A1P20849 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
COL9A1P20849 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL9A1P20849 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.82■□□□□ 0.44
COL9A1P20849 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL9A1P20849 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL9A1P20849 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.82■□□□□ 0.44
COL9A1P20849 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL9A1P20849 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL9A1P20849 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL9A1P20849 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
COL9A1P20849 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL9A1P20849 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL9A1P20849 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC17.82■□□□□ 0.44
COL9A1P20849 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.82■□□□□ 0.44
COL9A1P20849 AC103564.2-201ENST00000432853 1299 ntBASIC17.82■□□□□ 0.44
COL9A1P20849 INE1-201ENST00000456273 945 ntBASIC17.82■□□□□ 0.44
COL9A1P20849 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.82■□□□□ 0.44
COL9A1P20849 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
COL9A1P20849 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC17.82■□□□□ 0.44
COL9A1P20849 CDK4-206ENST00000549606 558 ntTSL 2 BASIC17.82■□□□□ 0.44
COL9A1P20849 COG4-212ENST00000564653 590 ntTSL 5 BASIC17.82■□□□□ 0.44
COL9A1P20849 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.82■□□□□ 0.44
COL9A1P20849 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.82■□□□□ 0.44
COL9A1P20849 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.82■□□□□ 0.44
COL9A1P20849 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL9A1P20849 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.82■□□□□ 0.44
COL9A1P20849 AC148477.5-201ENST00000625164 1645 ntBASIC17.82■□□□□ 0.44
COL9A1P20849 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
COL9A1P20849 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL9A1P20849 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.82■□□□□ 0.44
COL9A1P20849 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
COL9A1P20849 AL096828.2-201ENST00000567259 1965 ntBASIC17.82■□□□□ 0.44
COL9A1P20849 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL9A1P20849 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL9A1P20849 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.82■□□□□ 0.44
COL9A1P20849 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL9A1P20849 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.81■□□□□ 0.44
COL9A1P20849 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
COL9A1P20849 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
COL9A1P20849 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms