Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLDN9O95484 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.3
CLDN9O95484 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLDN9O95484 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLDN9O95484 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLDN9O95484 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLDN9O95484 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.91■□□□□ 0.3
CLDN9O95484 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLDN9O95484 AC022211.2-201ENST00000585075 2527 ntBASIC16.91■□□□□ 0.3
CLDN9O95484 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLDN9O95484 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC16.91■□□□□ 0.3
CLDN9O95484 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.91■□□□□ 0.3
CLDN9O95484 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLDN9O95484 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLDN9O95484 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLDN9O95484 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLDN9O95484 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.91■□□□□ 0.3
CLDN9O95484 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.91■□□□□ 0.3
CLDN9O95484 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.91■□□□□ 0.3
CLDN9O95484 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.91■□□□□ 0.3
CLDN9O95484 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.91■□□□□ 0.3
CLDN9O95484 AC009533.2-201ENST00000543664 586 ntBASIC16.91■□□□□ 0.3
CLDN9O95484 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.91■□□□□ 0.3
CLDN9O95484 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLDN9O95484 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.91■□□□□ 0.3
CLDN9O95484 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CLDN9O95484 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.91■□□□□ 0.3
CLDN9O95484 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLDN9O95484 AC116407.4-201ENST00000623319 1061 ntBASIC16.91■□□□□ 0.3
CLDN9O95484 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.91■□□□□ 0.3
CLDN9O95484 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLDN9O95484 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
CLDN9O95484 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLDN9O95484 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
CLDN9O95484 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLDN9O95484 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLDN9O95484 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLDN9O95484 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CLDN9O95484 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLDN9O95484 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC16.91■□□□□ 0.3
CLDN9O95484 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.91■□□□□ 0.3
CLDN9O95484 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CLDN9O95484 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLDN9O95484 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.91■□□□□ 0.3
CLDN9O95484 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLDN9O95484 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
CLDN9O95484 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.91■□□□□ 0.3
CLDN9O95484 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.91■□□□□ 0.3
CLDN9O95484 AC009053.2-201ENST00000563701 2365 ntBASIC16.91■□□□□ 0.3
CLDN9O95484 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.9■□□□□ 0.3
CLDN9O95484 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.9■□□□□ 0.3
CLDN9O95484 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLDN9O95484 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.9■□□□□ 0.3
CLDN9O95484 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.9■□□□□ 0.3
CLDN9O95484 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.9■□□□□ 0.3
CLDN9O95484 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLDN9O95484 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLDN9O95484 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLDN9O95484 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLDN9O95484 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLDN9O95484 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.9■□□□□ 0.3
CLDN9O95484 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLDN9O95484 AL049757.1-201ENST00000616842 1596 ntBASIC16.9■□□□□ 0.3
CLDN9O95484 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLDN9O95484 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.9■□□□□ 0.3
CLDN9O95484 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLDN9O95484 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLDN9O95484 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLDN9O95484 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLDN9O95484 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.9■□□□□ 0.3
CLDN9O95484 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLDN9O95484 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.9■□□□□ 0.3
CLDN9O95484 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLDN9O95484 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
CLDN9O95484 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.9■□□□□ 0.3
CLDN9O95484 AL590326.2-201ENST00000625139 305 ntBASIC16.9■□□□□ 0.3
CLDN9O95484 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLDN9O95484 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLDN9O95484 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLDN9O95484 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLDN9O95484 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CLDN9O95484 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.9■□□□□ 0.3
CLDN9O95484 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLDN9O95484 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.9■□□□□ 0.3
CLDN9O95484 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLDN9O95484 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLDN9O95484 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLDN9O95484 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLDN9O95484 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.89■□□□□ 0.3
CLDN9O95484 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
CLDN9O95484 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
CLDN9O95484 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.89■□□□□ 0.3
CLDN9O95484 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
CLDN9O95484 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLDN9O95484 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLDN9O95484 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
CLDN9O95484 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
CLDN9O95484 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLDN9O95484 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLDN9O95484 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms