Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
RTN3O95197 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RTN3O95197 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RTN3O95197 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.43■□□□□ 0.54
RTN3O95197 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.42■□□□□ 0.54
RTN3O95197 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RTN3O95197 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.42■□□□□ 0.54
RTN3O95197 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
RTN3O95197 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
RTN3O95197 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.42■□□□□ 0.54
RTN3O95197 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
RTN3O95197 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RTN3O95197 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
RTN3O95197 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RTN3O95197 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.42■□□□□ 0.54
RTN3O95197 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC18.42■□□□□ 0.54
RTN3O95197 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.42■□□□□ 0.54
RTN3O95197 AL590627.1-203ENST00000421194 1026 ntBASIC18.42■□□□□ 0.54
RTN3O95197 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
RTN3O95197 STK19B-204ENST00000512515 211 ntBASIC18.42■□□□□ 0.54
RTN3O95197 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.42■□□□□ 0.54
RTN3O95197 AC139887.3-201ENST00000568585 713 ntBASIC18.42■□□□□ 0.54
RTN3O95197 MIR7706-201ENST00000613747 67 ntBASIC18.42■□□□□ 0.54
RTN3O95197 ABBA01031661.1-201ENST00000634362 1253 ntBASIC18.42■□□□□ 0.54
RTN3O95197 AC107918.4-202ENST00000641623 219 ntBASIC18.42■□□□□ 0.54
RTN3O95197 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
RTN3O95197 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.42■□□□□ 0.54
RTN3O95197 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RTN3O95197 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RTN3O95197 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RTN3O95197 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
RTN3O95197 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RTN3O95197 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RTN3O95197 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.42■□□□□ 0.54
RTN3O95197 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RTN3O95197 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RTN3O95197 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RTN3O95197 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RTN3O95197 HLA-J-201ENST00000462773 1622 ntBASIC18.41■□□□□ 0.54
RTN3O95197 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
RTN3O95197 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.41■□□□□ 0.54
RTN3O95197 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RTN3O95197 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RTN3O95197 MST1L-201ENST00000442552 2185 ntBASIC18.41■□□□□ 0.54
RTN3O95197 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RTN3O95197 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
RTN3O95197 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RTN3O95197 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
RTN3O95197 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RTN3O95197 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.41■□□□□ 0.54
RTN3O95197 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RTN3O95197 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.41■□□□□ 0.54
RTN3O95197 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RTN3O95197 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RTN3O95197 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RTN3O95197 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RTN3O95197 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.41■□□□□ 0.54
RTN3O95197 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC18.41■□□□□ 0.54
RTN3O95197 LAGE3P1-201ENST00000425356 484 ntBASIC18.41■□□□□ 0.54
RTN3O95197 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RTN3O95197 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.41■□□□□ 0.54
RTN3O95197 SIGLEC30P-201ENST00000455569 941 ntBASIC18.41■□□□□ 0.54
RTN3O95197 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.41■□□□□ 0.54
RTN3O95197 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.41■□□□□ 0.54
RTN3O95197 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.41■□□□□ 0.54
RTN3O95197 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.41■□□□□ 0.54
RTN3O95197 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
RTN3O95197 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
RTN3O95197 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC18.41■□□□□ 0.54
RTN3O95197 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.41■□□□□ 0.54
RTN3O95197 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC18.41■□□□□ 0.54
RTN3O95197 AC120114.3-201ENST00000611923 658 ntBASIC18.41■□□□□ 0.54
RTN3O95197 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC18.41■□□□□ 0.54
RTN3O95197 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
RTN3O95197 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
RTN3O95197 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
RTN3O95197 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.41■□□□□ 0.54
RTN3O95197 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
RTN3O95197 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.41■□□□□ 0.54
RTN3O95197 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RTN3O95197 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.41■□□□□ 0.54
RTN3O95197 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RTN3O95197 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RTN3O95197 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RTN3O95197 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RTN3O95197 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
RTN3O95197 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
RTN3O95197 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.4■□□□□ 0.54
RTN3O95197 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RTN3O95197 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RTN3O95197 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RTN3O95197 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.4■□□□□ 0.54
RTN3O95197 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.4■□□□□ 0.54
RTN3O95197 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
RTN3O95197 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
RTN3O95197 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.4■□□□□ 0.54
RTN3O95197 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.4■□□□□ 0.54
RTN3O95197 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RTN3O95197 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RTN3O95197 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms