Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 STK19B-204ENST00000512515 211 ntBASIC16.45■□□□□ 0.22
LDB3O75112 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LDB3O75112 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.45■□□□□ 0.22
LDB3O75112 STK25P1-201ENST00000585406 838 ntBASIC16.45■□□□□ 0.22
LDB3O75112 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LDB3O75112 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.45■□□□□ 0.22
LDB3O75112 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.45■□□□□ 0.22
LDB3O75112 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LDB3O75112 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LDB3O75112 REXO1L6P-202ENST00000619970 1078 ntBASIC16.45■□□□□ 0.22
LDB3O75112 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.45■□□□□ 0.22
LDB3O75112 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDB3O75112 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
LDB3O75112 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDB3O75112 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDB3O75112 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDB3O75112 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDB3O75112 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.45■□□□□ 0.22
LDB3O75112 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDB3O75112 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
LDB3O75112 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
LDB3O75112 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.45■□□□□ 0.22
LDB3O75112 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDB3O75112 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
LDB3O75112 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.45■□□□□ 0.22
LDB3O75112 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC16.44■□□□□ 0.22
LDB3O75112 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDB3O75112 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDB3O75112 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.44■□□□□ 0.22
LDB3O75112 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDB3O75112 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDB3O75112 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.44■□□□□ 0.22
LDB3O75112 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDB3O75112 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LDB3O75112 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDB3O75112 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDB3O75112 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
LDB3O75112 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
LDB3O75112 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDB3O75112 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LDB3O75112 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.44■□□□□ 0.22
LDB3O75112 EMBP1-201ENST00000458200 901 ntBASIC16.44■□□□□ 0.22
LDB3O75112 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDB3O75112 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDB3O75112 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.44■□□□□ 0.22
LDB3O75112 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC16.44■□□□□ 0.22
LDB3O75112 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LDB3O75112 MTDHP3-201ENST00000594186 672 ntBASIC16.44■□□□□ 0.22
LDB3O75112 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LDB3O75112 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDB3O75112 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDB3O75112 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDB3O75112 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDB3O75112 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
LDB3O75112 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LDB3O75112 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDB3O75112 AC141586.5-201ENST00000624546 2050 ntBASIC16.44■□□□□ 0.22
LDB3O75112 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDB3O75112 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.44■□□□□ 0.22
LDB3O75112 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LDB3O75112 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LDB3O75112 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.43■□□□□ 0.22
LDB3O75112 AL138688.1-201ENST00000624851 1594 ntBASIC16.43■□□□□ 0.22
LDB3O75112 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDB3O75112 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LDB3O75112 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.43■□□□□ 0.22
LDB3O75112 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDB3O75112 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
LDB3O75112 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDB3O75112 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDB3O75112 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDB3O75112 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDB3O75112 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.43■□□□□ 0.22
LDB3O75112 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LDB3O75112 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDB3O75112 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDB3O75112 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LDB3O75112 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.43■□□□□ 0.22
LDB3O75112 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LDB3O75112 SAPCD2P3-201ENST00000455031 850 ntBASIC16.43■□□□□ 0.22
LDB3O75112 AC106795.1-205ENST00000512851 1056 ntBASIC16.43■□□□□ 0.22
LDB3O75112 AF238378.1-201ENST00000526806 358 ntBASIC16.43■□□□□ 0.22
LDB3O75112 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.43■□□□□ 0.22
LDB3O75112 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LDB3O75112 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
LDB3O75112 AC008608.2-201ENST00000606089 416 ntBASIC16.43■□□□□ 0.22
LDB3O75112 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.43■□□□□ 0.22
LDB3O75112 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.43■□□□□ 0.22
LDB3O75112 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDB3O75112 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.43■□□□□ 0.22
LDB3O75112 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDB3O75112 AC139713.2-201ENST00000641328 2723 ntBASIC16.43■□□□□ 0.22
LDB3O75112 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDB3O75112 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.43■□□□□ 0.22
LDB3O75112 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.43■□□□□ 0.22
LDB3O75112 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDB3O75112 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDB3O75112 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.43■□□□□ 0.22
LDB3O75112 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDB3O75112 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms