Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
VPS9D1Q9Y2B5 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS9D1Q9Y2B5 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.42■□□□□ 0.38
VPS9D1Q9Y2B5 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS9D1Q9Y2B5 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS9D1Q9Y2B5 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS9D1Q9Y2B5 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS9D1Q9Y2B5 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS9D1Q9Y2B5 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS9D1Q9Y2B5 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS9D1Q9Y2B5 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS9D1Q9Y2B5 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 AC108860.2-201ENST00000562760 2183 ntBASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 PPIH-202ENST00000372549 327 ntTSL 3 BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 MINOS1P3-201ENST00000457048 203 ntBASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 CIB2-208ENST00000560618 804 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 AC011467.2-201ENST00000598425 242 ntBASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 AC069148.1-201ENST00000608741 768 ntBASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS9D1Q9Y2B5 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 TPSP2-201ENST00000561760 610 ntBASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 AP002414.4-201ENST00000589764 1148 ntBASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 IL11-204ENST00000590625 1028 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS9D1Q9Y2B5 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.38
VPS9D1Q9Y2B5 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
VPS9D1Q9Y2B5 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
VPS9D1Q9Y2B5 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
VPS9D1Q9Y2B5 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
VPS9D1Q9Y2B5 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
VPS9D1Q9Y2B5 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.39■□□□□ 0.38
VPS9D1Q9Y2B5 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.39■□□□□ 0.38
VPS9D1Q9Y2B5 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms