Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
SHROOM4Q9ULL8 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC33.02■■■□□ 2.88
SHROOM4Q9ULL8 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
SHROOM4Q9ULL8 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC33.02■■■□□ 2.88
SHROOM4Q9ULL8 AL627223.1-201ENST00000416693 442 ntBASIC33.02■■■□□ 2.88
SHROOM4Q9ULL8 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC33.02■■■□□ 2.88
SHROOM4Q9ULL8 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
SHROOM4Q9ULL8 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC33.02■■■□□ 2.88
SHROOM4Q9ULL8 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC33.02■■■□□ 2.88
SHROOM4Q9ULL8 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
SHROOM4Q9ULL8 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
SHROOM4Q9ULL8 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC33.02■■■□□ 2.88
SHROOM4Q9ULL8 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
SHROOM4Q9ULL8 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC33.02■■■□□ 2.88
SHROOM4Q9ULL8 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC33.02■■■□□ 2.88
SHROOM4Q9ULL8 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC33.01■■■□□ 2.88
SHROOM4Q9ULL8 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC33.01■■■□□ 2.88
SHROOM4Q9ULL8 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.88
SHROOM4Q9ULL8 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC33.01■■■□□ 2.88
SHROOM4Q9ULL8 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC33.01■■■□□ 2.88
SHROOM4Q9ULL8 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC33.01■■■□□ 2.88
SHROOM4Q9ULL8 NAA60-208ENST00000570819 833 ntTSL 2 BASIC33.01■■■□□ 2.88
SHROOM4Q9ULL8 STK25P1-201ENST00000585406 838 ntBASIC33.01■■■□□ 2.88
SHROOM4Q9ULL8 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC33.01■■■□□ 2.88
SHROOM4Q9ULL8 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.88
SHROOM4Q9ULL8 PODN-203ENST00000395871 2744 ntTSL 5 BASIC33.01■■■□□ 2.88
SHROOM4Q9ULL8 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.88
SHROOM4Q9ULL8 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC33.01■■■□□ 2.87
SHROOM4Q9ULL8 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC33.01■■■□□ 2.87
SHROOM4Q9ULL8 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.87
SHROOM4Q9ULL8 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.87
SHROOM4Q9ULL8 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC33.01■■■□□ 2.87
SHROOM4Q9ULL8 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC33■■■□□ 2.87
SHROOM4Q9ULL8 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC33■■■□□ 2.87
SHROOM4Q9ULL8 AP002414.1-201ENST00000391405 1147 ntBASIC33■■■□□ 2.87
SHROOM4Q9ULL8 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
SHROOM4Q9ULL8 S100A2-206ENST00000497140 697 ntTSL 2 BASIC33■■■□□ 2.87
SHROOM4Q9ULL8 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC33■■■□□ 2.87
SHROOM4Q9ULL8 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC33■■■□□ 2.87
SHROOM4Q9ULL8 AC093520.2-201ENST00000561830 333 ntBASIC33■■■□□ 2.87
SHROOM4Q9ULL8 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC33■■■□□ 2.87
SHROOM4Q9ULL8 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC33■■■□□ 2.87
SHROOM4Q9ULL8 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC33■■■□□ 2.87
SHROOM4Q9ULL8 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
SHROOM4Q9ULL8 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC33■■■□□ 2.87
SHROOM4Q9ULL8 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC33■■■□□ 2.87
SHROOM4Q9ULL8 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC33■■■□□ 2.87
SHROOM4Q9ULL8 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC33■■■□□ 2.87
SHROOM4Q9ULL8 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC33■■■□□ 2.87
SHROOM4Q9ULL8 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC33■■■□□ 2.87
SHROOM4Q9ULL8 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
SHROOM4Q9ULL8 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC33■■■□□ 2.87
SHROOM4Q9ULL8 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC33■■■□□ 2.87
SHROOM4Q9ULL8 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
SHROOM4Q9ULL8 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC33■■■□□ 2.87
SHROOM4Q9ULL8 HLA-V-201ENST00000429037 534 ntBASIC32.99■■■□□ 2.87
SHROOM4Q9ULL8 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
SHROOM4Q9ULL8 AC093214.1-201ENST00000511688 1107 ntBASIC32.99■■■□□ 2.87
SHROOM4Q9ULL8 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC32.99■■■□□ 2.87
SHROOM4Q9ULL8 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
SHROOM4Q9ULL8 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC32.99■■■□□ 2.87
SHROOM4Q9ULL8 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC32.99■■■□□ 2.87
SHROOM4Q9ULL8 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
SHROOM4Q9ULL8 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
SHROOM4Q9ULL8 NEK7-201ENST00000367383 586 ntTSL 2 BASIC32.99■■■□□ 2.87
SHROOM4Q9ULL8 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC32.99■■■□□ 2.87
SHROOM4Q9ULL8 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
SHROOM4Q9ULL8 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC32.98■■■□□ 2.87
SHROOM4Q9ULL8 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
SHROOM4Q9ULL8 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
SHROOM4Q9ULL8 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
SHROOM4Q9ULL8 AC003669.1-201ENST00000334569 611 ntBASIC32.98■■■□□ 2.87
SHROOM4Q9ULL8 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
SHROOM4Q9ULL8 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC32.98■■■□□ 2.87
SHROOM4Q9ULL8 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC32.98■■■□□ 2.87
SHROOM4Q9ULL8 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC32.98■■■□□ 2.87
SHROOM4Q9ULL8 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC32.98■■■□□ 2.87
SHROOM4Q9ULL8 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC32.98■■■□□ 2.87
SHROOM4Q9ULL8 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
SHROOM4Q9ULL8 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
SHROOM4Q9ULL8 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC32.97■■■□□ 2.87
SHROOM4Q9ULL8 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC32.97■■■□□ 2.87
SHROOM4Q9ULL8 BX276092.7-203ENST00000637198 1536 ntBASIC32.97■■■□□ 2.87
SHROOM4Q9ULL8 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC32.97■■■□□ 2.87
SHROOM4Q9ULL8 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC32.97■■■□□ 2.87
SHROOM4Q9ULL8 CNN2P2-201ENST00000443536 909 ntBASIC32.97■■■□□ 2.87
SHROOM4Q9ULL8 CNN2P3-201ENST00000450201 906 ntBASIC32.97■■■□□ 2.87
SHROOM4Q9ULL8 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
SHROOM4Q9ULL8 AL136317.3-201ENST00000618497 906 ntBASIC32.97■■■□□ 2.87
SHROOM4Q9ULL8 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC32.97■■■□□ 2.87
SHROOM4Q9ULL8 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC32.97■■■□□ 2.87
SHROOM4Q9ULL8 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC32.97■■■□□ 2.87
SHROOM4Q9ULL8 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC32.97■■■□□ 2.87
SHROOM4Q9ULL8 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC32.97■■■□□ 2.87
SHROOM4Q9ULL8 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC32.97■■■□□ 2.87
SHROOM4Q9ULL8 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC32.96■■■□□ 2.87
SHROOM4Q9ULL8 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC32.96■■■□□ 2.87
SHROOM4Q9ULL8 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
SHROOM4Q9ULL8 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC32.96■■■□□ 2.87
SHROOM4Q9ULL8 AC236430.1-201ENST00000402231 743 ntBASIC32.96■■■□□ 2.87
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms