Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.29■□□□□ 0.84
CCDC39Q9UFE4 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC39Q9UFE4 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
CCDC39Q9UFE4 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC39Q9UFE4 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.29■□□□□ 0.84
CCDC39Q9UFE4 AL355312.1-201ENST00000407115 2176 ntBASIC20.29■□□□□ 0.84
CCDC39Q9UFE4 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC39Q9UFE4 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CCDC39Q9UFE4 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC39Q9UFE4 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC39Q9UFE4 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC39Q9UFE4 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC39Q9UFE4 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC39Q9UFE4 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC39Q9UFE4 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 AGGF1P2-201ENST00000426656 2106 ntBASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 AC104076.2-201ENST00000448912 469 ntBASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 AL359075.1-203ENST00000462729 1002 ntBASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 FGF14-AS2-201ENST00000606448 1074 ntBASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC39Q9UFE4 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 AC112907.2-201ENST00000448639 330 ntBASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 KRT18P38-201ENST00000449496 1282 ntBASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 LITAF-220ENST00000620789 692 ntTSL 5 BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC20.27■□□□□ 0.84
CCDC39Q9UFE4 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC20.27■□□□□ 0.83
CCDC39Q9UFE4 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC39Q9UFE4 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC20.27■□□□□ 0.83
CCDC39Q9UFE4 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC39Q9UFE4 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC39Q9UFE4 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms