Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
LHX3Q9UBR4 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
LHX3Q9UBR4 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
LHX3Q9UBR4 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
LHX3Q9UBR4 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.58■□□□□ 0.41
LHX3Q9UBR4 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.41
LHX3Q9UBR4 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
LHX3Q9UBR4 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC17.58■□□□□ 0.41
LHX3Q9UBR4 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.58■□□□□ 0.41
LHX3Q9UBR4 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
LHX3Q9UBR4 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LHX3Q9UBR4 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LHX3Q9UBR4 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
LHX3Q9UBR4 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LHX3Q9UBR4 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.58■□□□□ 0.4
LHX3Q9UBR4 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LHX3Q9UBR4 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.58■□□□□ 0.4
LHX3Q9UBR4 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LHX3Q9UBR4 ACTG1P4-201ENST00000425123 1122 ntBASIC17.58■□□□□ 0.4
LHX3Q9UBR4 KRT18P27-201ENST00000427733 1299 ntBASIC17.58■□□□□ 0.4
LHX3Q9UBR4 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.58■□□□□ 0.4
LHX3Q9UBR4 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.58■□□□□ 0.4
LHX3Q9UBR4 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
LHX3Q9UBR4 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC17.58■□□□□ 0.4
LHX3Q9UBR4 AL353135.1-201ENST00000606729 504 ntBASIC17.58■□□□□ 0.4
LHX3Q9UBR4 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.58■□□□□ 0.4
LHX3Q9UBR4 AC004706.3-202ENST00000621574 984 ntBASIC17.58■□□□□ 0.4
LHX3Q9UBR4 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LHX3Q9UBR4 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
LHX3Q9UBR4 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LHX3Q9UBR4 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
LHX3Q9UBR4 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LHX3Q9UBR4 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LHX3Q9UBR4 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LHX3Q9UBR4 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
LHX3Q9UBR4 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LHX3Q9UBR4 PP12613-201ENST00000424958 2230 ntBASIC17.57■□□□□ 0.4
LHX3Q9UBR4 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 AP002414.3-201ENST00000589352 1468 ntBASIC17.57■□□□□ 0.4
LHX3Q9UBR4 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 ELK2BP-201ENST00000415014 1224 ntBASIC17.57■□□□□ 0.4
LHX3Q9UBR4 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 AC079776.4-201ENST00000511039 504 ntBASIC17.57■□□□□ 0.4
LHX3Q9UBR4 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 AL139424.1-201ENST00000607572 797 ntBASIC17.57■□□□□ 0.4
LHX3Q9UBR4 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LHX3Q9UBR4 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 AC073621.1-201ENST00000392730 636 ntBASIC17.56■□□□□ 0.4
LHX3Q9UBR4 SLC25A1P3-201ENST00000395415 828 ntBASIC17.56■□□□□ 0.4
LHX3Q9UBR4 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 AC006557.2-201ENST00000592985 1240 ntBASIC17.56■□□□□ 0.4
LHX3Q9UBR4 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.56■□□□□ 0.4
LHX3Q9UBR4 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms