Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 BX276092.7-203ENST00000637198 1536 ntBASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 BCL2-203ENST00000589955 5011 ntBASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 SIRPAP1-201ENST00000448467 1770 ntBASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 AC003669.1-201ENST00000334569 611 ntBASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 AL356488.2-201ENST00000602755 427 ntBASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 FLYWCH1P1-201ENST00000460917 1874 ntBASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC19.15■□□□□ 0.66
TRAIPQ9BWF2 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC19.14■□□□□ 0.66
TRAIPQ9BWF2 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
TRAIPQ9BWF2 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC19.14■□□□□ 0.66
TRAIPQ9BWF2 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC19.14■□□□□ 0.66
TRAIPQ9BWF2 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 IMP4-203ENST00000409935 958 ntTSL 5 BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 AC004817.3-201ENST00000602957 2129 ntBASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 FUT8-AS1-201ENST00000621019 1521 ntBASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC19.14■□□□□ 0.65
TRAIPQ9BWF2 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 NKTR-203ENST00000442970 646 ntTSL 2 BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 AC009947.1-201ENST00000444350 727 ntBASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 SDCCAG3P1-201ENST00000589292 1150 ntBASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms