Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS35Q96QK1 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.38■□□□□ 0.37
VPS35Q96QK1 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
VPS35Q96QK1 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS35Q96QK1 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS35Q96QK1 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS35Q96QK1 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.38■□□□□ 0.37
VPS35Q96QK1 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
VPS35Q96QK1 FGFR3P6-201ENST00000457012 610 ntBASIC17.38■□□□□ 0.37
VPS35Q96QK1 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.38■□□□□ 0.37
VPS35Q96QK1 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS35Q96QK1 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC17.38■□□□□ 0.37
VPS35Q96QK1 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VPS35Q96QK1 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VPS35Q96QK1 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.38■□□□□ 0.37
VPS35Q96QK1 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.38■□□□□ 0.37
VPS35Q96QK1 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
VPS35Q96QK1 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
VPS35Q96QK1 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS35Q96QK1 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS35Q96QK1 AC079776.2-201ENST00000641154 1609 ntBASIC17.38■□□□□ 0.37
VPS35Q96QK1 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS35Q96QK1 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS35Q96QK1 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS35Q96QK1 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS35Q96QK1 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.38■□□□□ 0.37
VPS35Q96QK1 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VPS35Q96QK1 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS35Q96QK1 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VPS35Q96QK1 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VPS35Q96QK1 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS35Q96QK1 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS35Q96QK1 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VPS35Q96QK1 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VPS35Q96QK1 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VPS35Q96QK1 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS35Q96QK1 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.37■□□□□ 0.37
VPS35Q96QK1 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
VPS35Q96QK1 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS35Q96QK1 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.37■□□□□ 0.37
VPS35Q96QK1 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS35Q96QK1 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS35Q96QK1 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
VPS35Q96QK1 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VPS35Q96QK1 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS35Q96QK1 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.37■□□□□ 0.37
VPS35Q96QK1 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.37■□□□□ 0.37
VPS35Q96QK1 KLF4P1-201ENST00000412782 1185 ntBASIC17.37■□□□□ 0.37
VPS35Q96QK1 SPDYE21P-201ENST00000413323 827 ntBASIC17.37■□□□□ 0.37
VPS35Q96QK1 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.37■□□□□ 0.37
VPS35Q96QK1 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.37■□□□□ 0.37
VPS35Q96QK1 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.37■□□□□ 0.37
VPS35Q96QK1 MTDHP3-201ENST00000594186 672 ntBASIC17.37■□□□□ 0.37
VPS35Q96QK1 AL121912.1-201ENST00000603683 238 ntBASIC17.37■□□□□ 0.37
VPS35Q96QK1 AL139288.1-201ENST00000623748 933 ntBASIC17.37■□□□□ 0.37
VPS35Q96QK1 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS35Q96QK1 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
VPS35Q96QK1 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.37■□□□□ 0.37
VPS35Q96QK1 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.37■□□□□ 0.37
VPS35Q96QK1 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS35Q96QK1 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
VPS35Q96QK1 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS35Q96QK1 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS35Q96QK1 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VPS35Q96QK1 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS35Q96QK1 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS35Q96QK1 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
VPS35Q96QK1 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
VPS35Q96QK1 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS35Q96QK1 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VPS35Q96QK1 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS35Q96QK1 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VPS35Q96QK1 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VPS35Q96QK1 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VPS35Q96QK1 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
VPS35Q96QK1 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
VPS35Q96QK1 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.36■□□□□ 0.37
VPS35Q96QK1 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VPS35Q96QK1 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.36■□□□□ 0.37
VPS35Q96QK1 AL139327.4-201ENST00000612362 153 ntBASIC17.36■□□□□ 0.37
VPS35Q96QK1 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
VPS35Q96QK1 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VPS35Q96QK1 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS35Q96QK1 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
VPS35Q96QK1 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS35Q96QK1 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS35Q96QK1 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
VPS35Q96QK1 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS35Q96QK1 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.36■□□□□ 0.37
VPS35Q96QK1 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.36■□□□□ 0.37
VPS35Q96QK1 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.36■□□□□ 0.37
VPS35Q96QK1 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS35Q96QK1 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS35Q96QK1 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
VPS35Q96QK1 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VPS35Q96QK1 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS35Q96QK1 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
VPS35Q96QK1 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS35Q96QK1 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VPS35Q96QK1 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms