Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
C9orf40Q8IXQ3 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 AL138688.1-201ENST00000624851 1594 ntBASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 AL662844.1-201ENST00000546340 181 ntBASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 AC064862.7-201ENST00000604520 867 ntBASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
C9orf40Q8IXQ3 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 AL135999.2-201ENST00000622438 1686 ntBASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 RNA5SP419-201ENST00000515908 135 ntBASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 OR7E14P-202ENST00000530490 1290 ntBASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
C9orf40Q8IXQ3 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 AC005332.8-201ENST00000622750 2735 ntBASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 AL031284.1-201ENST00000419297 478 ntBASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 MIR7706-201ENST00000613747 67 ntBASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 FAM215A-202ENST00000632077 792 ntBASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 AC107918.4-202ENST00000641623 219 ntBASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 HLA-A-201ENST00000376802 1334 ntBASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 AC097637.2-201ENST00000624096 1997 ntBASIC16.11■□□□□ 0.17
C9orf40Q8IXQ3 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms