Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC19.96■□□□□ 0.79
ATL3Q6DD88 STK25P1-201ENST00000585406 838 ntBASIC19.96■□□□□ 0.79
ATL3Q6DD88 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ATL3Q6DD88 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ATL3Q6DD88 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
ATL3Q6DD88 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
ATL3Q6DD88 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC19.96■□□□□ 0.79
ATL3Q6DD88 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC19.96■□□□□ 0.79
ATL3Q6DD88 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
ATL3Q6DD88 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ATL3Q6DD88 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC19.96■□□□□ 0.79
ATL3Q6DD88 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.95■□□□□ 0.79
ATL3Q6DD88 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC19.95■□□□□ 0.78
ATL3Q6DD88 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC19.95■□□□□ 0.78
ATL3Q6DD88 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATL3Q6DD88 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATL3Q6DD88 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATL3Q6DD88 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC19.95■□□□□ 0.78
ATL3Q6DD88 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
ATL3Q6DD88 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
ATL3Q6DD88 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATL3Q6DD88 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC19.95■□□□□ 0.78
ATL3Q6DD88 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATL3Q6DD88 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
ATL3Q6DD88 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATL3Q6DD88 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATL3Q6DD88 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATL3Q6DD88 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.95■□□□□ 0.78
ATL3Q6DD88 AC104076.2-201ENST00000448912 469 ntBASIC19.95■□□□□ 0.78
ATL3Q6DD88 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC19.95■□□□□ 0.78
ATL3Q6DD88 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19.95■□□□□ 0.78
ATL3Q6DD88 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
ATL3Q6DD88 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
ATL3Q6DD88 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC19.95■□□□□ 0.78
ATL3Q6DD88 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.95■□□□□ 0.78
ATL3Q6DD88 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.95■□□□□ 0.78
ATL3Q6DD88 AL592071.1-201ENST00000611956 408 ntBASIC19.95■□□□□ 0.78
ATL3Q6DD88 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.95■□□□□ 0.78
ATL3Q6DD88 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
ATL3Q6DD88 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC19.95■□□□□ 0.78
ATL3Q6DD88 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
ATL3Q6DD88 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATL3Q6DD88 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATL3Q6DD88 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
ATL3Q6DD88 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ATL3Q6DD88 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ATL3Q6DD88 AL353593.2-201ENST00000602529 1483 ntBASIC19.94■□□□□ 0.78
ATL3Q6DD88 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ATL3Q6DD88 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
ATL3Q6DD88 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC19.94■□□□□ 0.78
ATL3Q6DD88 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
ATL3Q6DD88 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
ATL3Q6DD88 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
ATL3Q6DD88 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC19.94■□□□□ 0.78
ATL3Q6DD88 AC246785.2-201ENST00000432512 513 ntBASIC19.94■□□□□ 0.78
ATL3Q6DD88 DANCR-204ENST00000444958 709 ntTSL 3 BASIC19.94■□□□□ 0.78
ATL3Q6DD88 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC19.94■□□□□ 0.78
ATL3Q6DD88 AL671277.2-201ENST00000458060 996 ntBASIC19.94■□□□□ 0.78
ATL3Q6DD88 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ATL3Q6DD88 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ATL3Q6DD88 LINC01238-205ENST00000567549 1107 ntBASIC19.94■□□□□ 0.78
ATL3Q6DD88 AC005336.2-201ENST00000593183 939 ntBASIC19.94■□□□□ 0.78
ATL3Q6DD88 LINC01023-201ENST00000606054 436 ntBASIC19.94■□□□□ 0.78
ATL3Q6DD88 AC124864.1-201ENST00000623408 392 ntBASIC19.94■□□□□ 0.78
ATL3Q6DD88 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ATL3Q6DD88 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC19.94■□□□□ 0.78
ATL3Q6DD88 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ATL3Q6DD88 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ATL3Q6DD88 AC092053.1-201ENST00000605787 1936 ntBASIC19.94■□□□□ 0.78
ATL3Q6DD88 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
ATL3Q6DD88 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC19.93■□□□□ 0.78
ATL3Q6DD88 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ATL3Q6DD88 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ATL3Q6DD88 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATL3Q6DD88 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATL3Q6DD88 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ATL3Q6DD88 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATL3Q6DD88 EGFEM1P-202ENST00000431685 1563 ntBASIC19.93■□□□□ 0.78
ATL3Q6DD88 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ATL3Q6DD88 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC19.93■□□□□ 0.78
ATL3Q6DD88 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
ATL3Q6DD88 CD9-202ENST00000382515 1229 ntTSL 5 BASIC19.93■□□□□ 0.78
ATL3Q6DD88 AL845331.1-201ENST00000424978 1190 ntBASIC19.93■□□□□ 0.78
ATL3Q6DD88 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATL3Q6DD88 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC19.93■□□□□ 0.78
ATL3Q6DD88 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC19.93■□□□□ 0.78
ATL3Q6DD88 AC011840.4-201ENST00000578471 627 ntBASIC19.93■□□□□ 0.78
ATL3Q6DD88 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC19.93■□□□□ 0.78
ATL3Q6DD88 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATL3Q6DD88 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATL3Q6DD88 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATL3Q6DD88 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATL3Q6DD88 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
ATL3Q6DD88 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATL3Q6DD88 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
ATL3Q6DD88 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATL3Q6DD88 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATL3Q6DD88 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATL3Q6DD88 AC005915.1-201ENST00000624912 2018 ntBASIC19.93■□□□□ 0.78
ATL3Q6DD88 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms