Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.79■□□□□ 0.44
USP39Q53GS9 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.79■□□□□ 0.44
USP39Q53GS9 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC17.79■□□□□ 0.44
USP39Q53GS9 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.79■□□□□ 0.44
USP39Q53GS9 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.79■□□□□ 0.44
USP39Q53GS9 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.79■□□□□ 0.44
USP39Q53GS9 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.79■□□□□ 0.44
USP39Q53GS9 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.79■□□□□ 0.44
USP39Q53GS9 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
USP39Q53GS9 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.79■□□□□ 0.44
USP39Q53GS9 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
USP39Q53GS9 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
USP39Q53GS9 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP39Q53GS9 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.79■□□□□ 0.44
USP39Q53GS9 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
USP39Q53GS9 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.78■□□□□ 0.44
USP39Q53GS9 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
USP39Q53GS9 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP39Q53GS9 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP39Q53GS9 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.78■□□□□ 0.44
USP39Q53GS9 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP39Q53GS9 LBH-203ENST00000404397 543 ntTSL 4 BASIC17.78■□□□□ 0.44
USP39Q53GS9 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.78■□□□□ 0.44
USP39Q53GS9 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC17.78■□□□□ 0.44
USP39Q53GS9 AC096633.1-201ENST00000422446 749 ntBASIC17.78■□□□□ 0.44
USP39Q53GS9 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC17.78■□□□□ 0.44
USP39Q53GS9 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.78■□□□□ 0.44
USP39Q53GS9 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC17.78■□□□□ 0.44
USP39Q53GS9 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.78■□□□□ 0.44
USP39Q53GS9 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.78■□□□□ 0.44
USP39Q53GS9 AC005829.1-201ENST00000570002 483 ntBASIC17.78■□□□□ 0.44
USP39Q53GS9 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.78■□□□□ 0.44
USP39Q53GS9 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP39Q53GS9 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP39Q53GS9 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP39Q53GS9 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP39Q53GS9 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP39Q53GS9 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP39Q53GS9 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
USP39Q53GS9 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.78■□□□□ 0.44
USP39Q53GS9 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP39Q53GS9 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
USP39Q53GS9 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
USP39Q53GS9 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP39Q53GS9 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
USP39Q53GS9 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP39Q53GS9 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
USP39Q53GS9 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
USP39Q53GS9 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.77■□□□□ 0.44
USP39Q53GS9 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
USP39Q53GS9 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
USP39Q53GS9 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
USP39Q53GS9 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.77■□□□□ 0.44
USP39Q53GS9 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
USP39Q53GS9 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
USP39Q53GS9 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
USP39Q53GS9 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
USP39Q53GS9 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
USP39Q53GS9 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
USP39Q53GS9 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
USP39Q53GS9 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
USP39Q53GS9 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.77■□□□□ 0.44
USP39Q53GS9 AC103564.2-201ENST00000432853 1299 ntBASIC17.77■□□□□ 0.44
USP39Q53GS9 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.77■□□□□ 0.44
USP39Q53GS9 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.77■□□□□ 0.44
USP39Q53GS9 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.77■□□□□ 0.44
USP39Q53GS9 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.77■□□□□ 0.44
USP39Q53GS9 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.77■□□□□ 0.44
USP39Q53GS9 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.77■□□□□ 0.44
USP39Q53GS9 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.77■□□□□ 0.44
USP39Q53GS9 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.77■□□□□ 0.44
USP39Q53GS9 SIGLEC16-201ENST00000599858 1437 ntBASIC17.77■□□□□ 0.44
USP39Q53GS9 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
USP39Q53GS9 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.77■□□□□ 0.44
USP39Q53GS9 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
USP39Q53GS9 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
USP39Q53GS9 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
USP39Q53GS9 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
USP39Q53GS9 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
USP39Q53GS9 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP39Q53GS9 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
USP39Q53GS9 AC093677.2-201ENST00000600169 1863 ntBASIC17.76■□□□□ 0.43
USP39Q53GS9 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP39Q53GS9 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USP39Q53GS9 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP39Q53GS9 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP39Q53GS9 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.76■□□□□ 0.43
USP39Q53GS9 AC073621.1-201ENST00000392730 636 ntBASIC17.76■□□□□ 0.43
USP39Q53GS9 MCCD1P2-201ENST00000423228 335 ntBASIC17.76■□□□□ 0.43
USP39Q53GS9 AP006288.1-201ENST00000446065 395 ntBASIC17.76■□□□□ 0.43
USP39Q53GS9 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.76■□□□□ 0.43
USP39Q53GS9 SNHG9-202ENST00000564014 471 ntBASIC17.76■□□□□ 0.43
USP39Q53GS9 LINC02084-201ENST00000606069 1096 ntBASIC17.76■□□□□ 0.43
USP39Q53GS9 AL596442.2-201ENST00000610240 980 ntBASIC17.76■□□□□ 0.43
USP39Q53GS9 AL589182.2-201ENST00000619332 1049 ntBASIC17.76■□□□□ 0.43
USP39Q53GS9 AD001527.2-201ENST00000622994 785 ntBASIC17.76■□□□□ 0.43
USP39Q53GS9 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
USP39Q53GS9 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
USP39Q53GS9 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
USP39Q53GS9 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms