Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA1P55317 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA1P55317 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA1P55317 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
FOXA1P55317 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA1P55317 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.94■□□□□ 0.3
FOXA1P55317 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA1P55317 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA1P55317 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
FOXA1P55317 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
FOXA1P55317 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.94■□□□□ 0.3
FOXA1P55317 LINC02012-201ENST00000608206 1725 ntBASIC16.94■□□□□ 0.3
FOXA1P55317 AC093525.9-201ENST00000624961 1746 ntBASIC16.94■□□□□ 0.3
FOXA1P55317 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
FOXA1P55317 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.94■□□□□ 0.3
FOXA1P55317 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA1P55317 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.94■□□□□ 0.3
FOXA1P55317 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.94■□□□□ 0.3
FOXA1P55317 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA1P55317 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC16.94■□□□□ 0.3
FOXA1P55317 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA1P55317 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.94■□□□□ 0.3
FOXA1P55317 PPOX-219ENST00000544598 813 ntTSL 2 BASIC16.94■□□□□ 0.3
FOXA1P55317 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.94■□□□□ 0.3
FOXA1P55317 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.94■□□□□ 0.3
FOXA1P55317 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA1P55317 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
FOXA1P55317 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA1P55317 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA1P55317 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.94■□□□□ 0.3
FOXA1P55317 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA1P55317 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
FOXA1P55317 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA1P55317 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
FOXA1P55317 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA1P55317 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.94■□□□□ 0.3
FOXA1P55317 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA1P55317 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA1P55317 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA1P55317 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA1P55317 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.94■□□□□ 0.3
FOXA1P55317 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
FOXA1P55317 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.93■□□□□ 0.3
FOXA1P55317 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.93■□□□□ 0.3
FOXA1P55317 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
FOXA1P55317 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.93■□□□□ 0.3
FOXA1P55317 PCDHA14-201ENST00000506751 2298 ntBASIC16.93■□□□□ 0.3
FOXA1P55317 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.93■□□□□ 0.3
FOXA1P55317 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 AL845331.1-201ENST00000424978 1190 ntBASIC16.93■□□□□ 0.3
FOXA1P55317 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
FOXA1P55317 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC16.93■□□□□ 0.3
FOXA1P55317 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC16.93■□□□□ 0.3
FOXA1P55317 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC16.93■□□□□ 0.3
FOXA1P55317 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.93■□□□□ 0.3
FOXA1P55317 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.93■□□□□ 0.3
FOXA1P55317 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
FOXA1P55317 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA1P55317 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.92■□□□□ 0.3
FOXA1P55317 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA1P55317 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA1P55317 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.92■□□□□ 0.3
FOXA1P55317 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA1P55317 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
FOXA1P55317 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA1P55317 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA1P55317 RN7SL606P-201ENST00000472779 293 ntBASIC16.92■□□□□ 0.3
FOXA1P55317 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.92■□□□□ 0.3
FOXA1P55317 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA1P55317 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC16.92■□□□□ 0.3
FOXA1P55317 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16.92■□□□□ 0.3
FOXA1P55317 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC16.92■□□□□ 0.3
FOXA1P55317 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.92■□□□□ 0.3
FOXA1P55317 AC109462.3-201ENST00000573934 613 ntBASIC16.92■□□□□ 0.3
FOXA1P55317 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.92■□□□□ 0.3
FOXA1P55317 CLN6-214ENST00000636314 442 ntTSL 3 BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms