Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
PTPN9P43378 AC148477.5-201ENST00000625164 1645 ntBASIC18.16■□□□□ 0.5
PTPN9P43378 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTPN9P43378 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.16■□□□□ 0.5
PTPN9P43378 AL135999.2-201ENST00000622438 1686 ntBASIC18.16■□□□□ 0.5
PTPN9P43378 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.16■□□□□ 0.5
PTPN9P43378 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.16■□□□□ 0.5
PTPN9P43378 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
PTPN9P43378 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.16■□□□□ 0.5
PTPN9P43378 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PTPN9P43378 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTPN9P43378 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTPN9P43378 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC18.16■□□□□ 0.5
PTPN9P43378 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.16■□□□□ 0.5
PTPN9P43378 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC18.16■□□□□ 0.5
PTPN9P43378 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC18.16■□□□□ 0.5
PTPN9P43378 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.16■□□□□ 0.5
PTPN9P43378 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTPN9P43378 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
PTPN9P43378 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTPN9P43378 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.16■□□□□ 0.5
PTPN9P43378 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.16■□□□□ 0.5
PTPN9P43378 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
PTPN9P43378 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.16■□□□□ 0.5
PTPN9P43378 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTPN9P43378 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTPN9P43378 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
PTPN9P43378 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTPN9P43378 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC18.16■□□□□ 0.5
PTPN9P43378 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.16■□□□□ 0.5
PTPN9P43378 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PTPN9P43378 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PTPN9P43378 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTPN9P43378 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTPN9P43378 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.15■□□□□ 0.5
PTPN9P43378 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTPN9P43378 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.15■□□□□ 0.5
PTPN9P43378 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTPN9P43378 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTPN9P43378 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTPN9P43378 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.15■□□□□ 0.5
PTPN9P43378 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18.15■□□□□ 0.5
PTPN9P43378 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTPN9P43378 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
PTPN9P43378 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTPN9P43378 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTPN9P43378 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTPN9P43378 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTPN9P43378 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTPN9P43378 SIGLEC30P-201ENST00000455569 941 ntBASIC18.15■□□□□ 0.5
PTPN9P43378 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTPN9P43378 SDHD-206ENST00000528182 754 ntTSL 3 BASIC18.15■□□□□ 0.5
PTPN9P43378 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTPN9P43378 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.15■□□□□ 0.5
PTPN9P43378 AC012313.10-201ENST00000623509 926 ntBASIC18.15■□□□□ 0.5
PTPN9P43378 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTPN9P43378 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PTPN9P43378 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.15■□□□□ 0.5
PTPN9P43378 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTPN9P43378 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTPN9P43378 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.14■□□□□ 0.5
PTPN9P43378 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC18.14■□□□□ 0.5
PTPN9P43378 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.14■□□□□ 0.5
PTPN9P43378 HTR7P1-202ENST00000624664 4411 ntBASIC18.14■□□□□ 0.5
PTPN9P43378 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
PTPN9P43378 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.14■□□□□ 0.5
PTPN9P43378 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC18.14■□□□□ 0.49
PTPN9P43378 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PTPN9P43378 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTPN9P43378 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.14■□□□□ 0.49
PTPN9P43378 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PTPN9P43378 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTPN9P43378 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PTPN9P43378 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.14■□□□□ 0.49
PTPN9P43378 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC18.14■□□□□ 0.49
PTPN9P43378 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18.14■□□□□ 0.49
PTPN9P43378 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC18.14■□□□□ 0.49
PTPN9P43378 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PTPN9P43378 REXO1L6P-202ENST00000619970 1078 ntBASIC18.14■□□□□ 0.49
PTPN9P43378 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTPN9P43378 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
PTPN9P43378 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.14■□□□□ 0.49
PTPN9P43378 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
PTPN9P43378 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.14■□□□□ 0.49
PTPN9P43378 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC18.14■□□□□ 0.49
PTPN9P43378 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTPN9P43378 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC18.14■□□□□ 0.49
PTPN9P43378 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.14■□□□□ 0.49
PTPN9P43378 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PTPN9P43378 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
PTPN9P43378 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
PTPN9P43378 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTPN9P43378 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
PTPN9P43378 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PTPN9P43378 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTPN9P43378 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTPN9P43378 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC18.13■□□□□ 0.49
PTPN9P43378 AC093525.9-201ENST00000624961 1746 ntBASIC18.13■□□□□ 0.49
PTPN9P43378 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTPN9P43378 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms