Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.87■□□□□ 0.45
COL9A1P20849 AC073592.3-201ENST00000625118 1834 ntBASIC17.87■□□□□ 0.45
COL9A1P20849 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL9A1P20849 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL9A1P20849 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.87■□□□□ 0.45
COL9A1P20849 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL9A1P20849 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
COL9A1P20849 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.87■□□□□ 0.45
COL9A1P20849 MXI1-205ENST00000393134 889 ntTSL 2 BASIC17.87■□□□□ 0.45
COL9A1P20849 SPDYE21P-201ENST00000413323 827 ntBASIC17.87■□□□□ 0.45
COL9A1P20849 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL9A1P20849 RPS15P9-201ENST00000494093 319 ntBASIC17.87■□□□□ 0.45
COL9A1P20849 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.87■□□□□ 0.45
COL9A1P20849 KRT17P8-201ENST00000540749 863 ntBASIC17.87■□□□□ 0.45
COL9A1P20849 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
COL9A1P20849 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC17.87■□□□□ 0.45
COL9A1P20849 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.87■□□□□ 0.45
COL9A1P20849 IGHV3-72-202ENST00000621503 303 ntBASIC17.87■□□□□ 0.45
COL9A1P20849 AC005786.4-201ENST00000623369 682 ntBASIC17.87■□□□□ 0.45
COL9A1P20849 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL9A1P20849 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL9A1P20849 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL9A1P20849 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.87■□□□□ 0.45
COL9A1P20849 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.87■□□□□ 0.45
COL9A1P20849 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.87■□□□□ 0.45
COL9A1P20849 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL9A1P20849 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.86■□□□□ 0.45
COL9A1P20849 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL9A1P20849 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
COL9A1P20849 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL9A1P20849 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL9A1P20849 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL9A1P20849 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL9A1P20849 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC17.86■□□□□ 0.45
COL9A1P20849 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL9A1P20849 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.86■□□□□ 0.45
COL9A1P20849 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL9A1P20849 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.86■□□□□ 0.45
COL9A1P20849 TNFRSF10A-AS1-201ENST00000518308 637 ntTSL 3 BASIC17.86■□□□□ 0.45
COL9A1P20849 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC17.86■□□□□ 0.45
COL9A1P20849 DUTP2-201ENST00000519164 463 ntBASIC17.86■□□□□ 0.45
COL9A1P20849 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC17.86■□□□□ 0.45
COL9A1P20849 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC17.86■□□□□ 0.45
COL9A1P20849 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL9A1P20849 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL9A1P20849 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC17.86■□□□□ 0.45
COL9A1P20849 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
COL9A1P20849 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL9A1P20849 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.86■□□□□ 0.45
COL9A1P20849 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL9A1P20849 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL9A1P20849 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
COL9A1P20849 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
COL9A1P20849 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.86■□□□□ 0.45
COL9A1P20849 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL9A1P20849 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.86■□□□□ 0.45
COL9A1P20849 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL9A1P20849 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL9A1P20849 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL9A1P20849 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.85■□□□□ 0.45
COL9A1P20849 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.85■□□□□ 0.45
COL9A1P20849 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL9A1P20849 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL9A1P20849 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC17.85■□□□□ 0.45
COL9A1P20849 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL9A1P20849 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC17.85■□□□□ 0.45
COL9A1P20849 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL9A1P20849 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
COL9A1P20849 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.85■□□□□ 0.45
COL9A1P20849 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.85■□□□□ 0.45
COL9A1P20849 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC17.85■□□□□ 0.45
COL9A1P20849 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC17.85■□□□□ 0.45
COL9A1P20849 AC097493.3-201ENST00000509725 367 ntBASIC17.85■□□□□ 0.45
COL9A1P20849 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL9A1P20849 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.85■□□□□ 0.45
COL9A1P20849 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
COL9A1P20849 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
COL9A1P20849 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL9A1P20849 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC17.85■□□□□ 0.45
COL9A1P20849 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL9A1P20849 SIGLEC16-201ENST00000599858 1437 ntBASIC17.85■□□□□ 0.45
COL9A1P20849 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
COL9A1P20849 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL9A1P20849 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.85■□□□□ 0.45
COL9A1P20849 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL9A1P20849 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.84■□□□□ 0.45
COL9A1P20849 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL9A1P20849 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL9A1P20849 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.84■□□□□ 0.45
COL9A1P20849 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL9A1P20849 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL9A1P20849 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL9A1P20849 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL9A1P20849 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL9A1P20849 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL9A1P20849 COX5BP2-201ENST00000392354 334 ntBASIC17.84■□□□□ 0.45
COL9A1P20849 KRT18P32-201ENST00000424695 1287 ntBASIC17.84■□□□□ 0.45
COL9A1P20849 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC17.84■□□□□ 0.45
COL9A1P20849 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
COL9A1P20849 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms