Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 AC111152.3-201ENST00000569699 673 ntBASIC18.38■□□□□ 0.53
PDGFRAP16234 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC18.38■□□□□ 0.53
PDGFRAP16234 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PDGFRAP16234 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC18.38■□□□□ 0.53
PDGFRAP16234 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PDGFRAP16234 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC18.38■□□□□ 0.53
PDGFRAP16234 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.38■□□□□ 0.53
PDGFRAP16234 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PDGFRAP16234 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PDGFRAP16234 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PDGFRAP16234 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
PDGFRAP16234 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PDGFRAP16234 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PDGFRAP16234 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
PDGFRAP16234 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PDGFRAP16234 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDGFRAP16234 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
PDGFRAP16234 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PDGFRAP16234 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PDGFRAP16234 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDGFRAP16234 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.37■□□□□ 0.53
PDGFRAP16234 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PDGFRAP16234 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDGFRAP16234 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
PDGFRAP16234 AC106820.2-201ENST00000563775 3264 ntBASIC18.37■□□□□ 0.53
PDGFRAP16234 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
PDGFRAP16234 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.37■□□□□ 0.53
PDGFRAP16234 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PDGFRAP16234 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.37■□□□□ 0.53
PDGFRAP16234 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PDGFRAP16234 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18.37■□□□□ 0.53
PDGFRAP16234 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDGFRAP16234 KRT18P31-201ENST00000506277 1292 ntBASIC18.37■□□□□ 0.53
PDGFRAP16234 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDGFRAP16234 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.37■□□□□ 0.53
PDGFRAP16234 AC091304.2-201ENST00000564639 760 ntBASIC18.37■□□□□ 0.53
PDGFRAP16234 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
PDGFRAP16234 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.37■□□□□ 0.53
PDGFRAP16234 AC114341.1-201ENST00000618070 349 ntBASIC18.37■□□□□ 0.53
PDGFRAP16234 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.37■□□□□ 0.53
PDGFRAP16234 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
PDGFRAP16234 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDGFRAP16234 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PDGFRAP16234 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDGFRAP16234 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDGFRAP16234 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.37■□□□□ 0.53
PDGFRAP16234 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
PDGFRAP16234 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDGFRAP16234 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDGFRAP16234 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.37■□□□□ 0.53
PDGFRAP16234 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.37■□□□□ 0.53
PDGFRAP16234 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.37■□□□□ 0.53
PDGFRAP16234 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PDGFRAP16234 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.36■□□□□ 0.53
PDGFRAP16234 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PDGFRAP16234 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PDGFRAP16234 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PDGFRAP16234 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PDGFRAP16234 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PDGFRAP16234 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.36■□□□□ 0.53
PDGFRAP16234 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
PDGFRAP16234 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.36■□□□□ 0.53
PDGFRAP16234 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PDGFRAP16234 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.36■□□□□ 0.53
PDGFRAP16234 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC18.36■□□□□ 0.53
PDGFRAP16234 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC18.36■□□□□ 0.53
PDGFRAP16234 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.36■□□□□ 0.53
PDGFRAP16234 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
PDGFRAP16234 AC108860.2-201ENST00000562760 2183 ntBASIC18.36■□□□□ 0.53
PDGFRAP16234 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC18.36■□□□□ 0.53
PDGFRAP16234 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PDGFRAP16234 AL023806.1-201ENST00000603994 1649 ntBASIC18.36■□□□□ 0.53
PDGFRAP16234 IFNL4P1-201ENST00000607083 540 ntBASIC18.36■□□□□ 0.53
PDGFRAP16234 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC18.36■□□□□ 0.53
PDGFRAP16234 AL691432.3-201ENST00000621860 400 ntBASIC18.36■□□□□ 0.53
PDGFRAP16234 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PDGFRAP16234 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.36■□□□□ 0.53
PDGFRAP16234 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PDGFRAP16234 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
PDGFRAP16234 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PDGFRAP16234 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PDGFRAP16234 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.35■□□□□ 0.53
PDGFRAP16234 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.35■□□□□ 0.53
PDGFRAP16234 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PDGFRAP16234 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
PDGFRAP16234 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC18.35■□□□□ 0.53
PDGFRAP16234 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PDGFRAP16234 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.35■□□□□ 0.53
PDGFRAP16234 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.35■□□□□ 0.53
PDGFRAP16234 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PDGFRAP16234 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PDGFRAP16234 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
PDGFRAP16234 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PDGFRAP16234 FICD-205ENST00000552758 603 ntTSL 2 BASIC18.35■□□□□ 0.53
PDGFRAP16234 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.35■□□□□ 0.53
PDGFRAP16234 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
PDGFRAP16234 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.35■□□□□ 0.53
PDGFRAP16234 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PDGFRAP16234 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PDGFRAP16234 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms