Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
PCNAP12004 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.08■□□□□ 0.33
PCNAP12004 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
PCNAP12004 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
PCNAP12004 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
PCNAP12004 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
PCNAP12004 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.08■□□□□ 0.33
PCNAP12004 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.33
PCNAP12004 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.08■□□□□ 0.33
PCNAP12004 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
PCNAP12004 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
PCNAP12004 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
PCNAP12004 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.08■□□□□ 0.32
PCNAP12004 AC133963.1-201ENST00000504166 1679 ntBASIC17.08■□□□□ 0.32
PCNAP12004 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PCNAP12004 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PCNAP12004 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.08■□□□□ 0.32
PCNAP12004 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PCNAP12004 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PCNAP12004 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.08■□□□□ 0.32
PCNAP12004 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
PCNAP12004 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.08■□□□□ 0.32
PCNAP12004 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.08■□□□□ 0.32
PCNAP12004 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PCNAP12004 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.08■□□□□ 0.32
PCNAP12004 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PCNAP12004 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PCNAP12004 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.08■□□□□ 0.32
PCNAP12004 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
PCNAP12004 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PCNAP12004 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PCNAP12004 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PCNAP12004 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
PCNAP12004 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PCNAP12004 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PCNAP12004 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PCNAP12004 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCNAP12004 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
PCNAP12004 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.07■□□□□ 0.32
PCNAP12004 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.07■□□□□ 0.32
PCNAP12004 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.07■□□□□ 0.32
PCNAP12004 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCNAP12004 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PCNAP12004 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCNAP12004 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
PCNAP12004 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.07■□□□□ 0.32
PCNAP12004 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCNAP12004 AC005332.1-201ENST00000577698 1310 ntBASIC17.07■□□□□ 0.32
PCNAP12004 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
PCNAP12004 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.07■□□□□ 0.32
PCNAP12004 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC17.07■□□□□ 0.32
PCNAP12004 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.07■□□□□ 0.32
PCNAP12004 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.07■□□□□ 0.32
PCNAP12004 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.07■□□□□ 0.32
PCNAP12004 AL592071.1-201ENST00000611956 408 ntBASIC17.07■□□□□ 0.32
PCNAP12004 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.07■□□□□ 0.32
PCNAP12004 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCNAP12004 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCNAP12004 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PCNAP12004 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCNAP12004 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCNAP12004 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.07■□□□□ 0.32
PCNAP12004 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCNAP12004 LINC00304-203ENST00000565008 1864 ntBASIC17.07■□□□□ 0.32
PCNAP12004 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
PCNAP12004 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCNAP12004 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
PCNAP12004 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCNAP12004 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PCNAP12004 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.07■□□□□ 0.32
PCNAP12004 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
PCNAP12004 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PCNAP12004 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PCNAP12004 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCNAP12004 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCNAP12004 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCNAP12004 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCNAP12004 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.06■□□□□ 0.32
PCNAP12004 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.06■□□□□ 0.32
PCNAP12004 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.06■□□□□ 0.32
PCNAP12004 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCNAP12004 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
PCNAP12004 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.06■□□□□ 0.32
PCNAP12004 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PCNAP12004 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.06■□□□□ 0.32
PCNAP12004 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCNAP12004 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCNAP12004 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCNAP12004 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCNAP12004 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
PCNAP12004 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.06■□□□□ 0.32
PCNAP12004 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC17.06■□□□□ 0.32
PCNAP12004 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.06■□□□□ 0.32
PCNAP12004 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.06■□□□□ 0.32
PCNAP12004 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCNAP12004 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCNAP12004 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
PCNAP12004 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.06■□□□□ 0.32
PCNAP12004 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.06■□□□□ 0.32
PCNAP12004 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms