Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.64■□□□□ 0.41
VIMP08670 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.64■□□□□ 0.41
VIMP08670 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VIMP08670 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VIMP08670 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VIMP08670 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VIMP08670 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VIMP08670 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
VIMP08670 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VIMP08670 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VIMP08670 HOXB1-202ENST00000577092 1414 ntBASIC17.64■□□□□ 0.41
VIMP08670 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
VIMP08670 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.64■□□□□ 0.41
VIMP08670 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC17.63■□□□□ 0.41
VIMP08670 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VIMP08670 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VIMP08670 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VIMP08670 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VIMP08670 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VIMP08670 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VIMP08670 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VIMP08670 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VIMP08670 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VIMP08670 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.63■□□□□ 0.41
VIMP08670 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.63■□□□□ 0.41
VIMP08670 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.63■□□□□ 0.41
VIMP08670 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
VIMP08670 AC092171.3-201ENST00000610122 2651 ntBASIC17.63■□□□□ 0.41
VIMP08670 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VIMP08670 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VIMP08670 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VIMP08670 AC239809.2-201ENST00000415381 517 ntBASIC17.63■□□□□ 0.41
VIMP08670 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17.63■□□□□ 0.41
VIMP08670 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC17.63■□□□□ 0.41
VIMP08670 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
VIMP08670 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.63■□□□□ 0.41
VIMP08670 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VIMP08670 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.63■□□□□ 0.41
VIMP08670 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
VIMP08670 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VIMP08670 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VIMP08670 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.63■□□□□ 0.41
VIMP08670 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.63■□□□□ 0.41
VIMP08670 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VIMP08670 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.63■□□□□ 0.41
VIMP08670 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.63■□□□□ 0.41
VIMP08670 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
VIMP08670 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
VIMP08670 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
VIMP08670 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.62■□□□□ 0.41
VIMP08670 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VIMP08670 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC17.62■□□□□ 0.41
VIMP08670 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
VIMP08670 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VIMP08670 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
VIMP08670 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.62■□□□□ 0.41
VIMP08670 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VIMP08670 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VIMP08670 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.62■□□□□ 0.41
VIMP08670 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
VIMP08670 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VIMP08670 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC17.62■□□□□ 0.41
VIMP08670 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
VIMP08670 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VIMP08670 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
VIMP08670 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VIMP08670 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
VIMP08670 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
VIMP08670 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.62■□□□□ 0.41
VIMP08670 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
VIMP08670 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.62■□□□□ 0.41
VIMP08670 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.62■□□□□ 0.41
VIMP08670 AL031985.4-201ENST00000642138 673 ntBASIC17.62■□□□□ 0.41
VIMP08670 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VIMP08670 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
VIMP08670 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
VIMP08670 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
VIMP08670 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VIMP08670 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VIMP08670 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
VIMP08670 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
VIMP08670 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VIMP08670 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
VIMP08670 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VIMP08670 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.62■□□□□ 0.41
VIMP08670 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.62■□□□□ 0.41
VIMP08670 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
VIMP08670 AL662844.4-201ENST00000606367 2838 ntBASIC17.62■□□□□ 0.41
VIMP08670 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.62■□□□□ 0.41
VIMP08670 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VIMP08670 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.61■□□□□ 0.41
VIMP08670 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VIMP08670 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.61■□□□□ 0.41
VIMP08670 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VIMP08670 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VIMP08670 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC17.61■□□□□ 0.41
VIMP08670 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.61■□□□□ 0.41
VIMP08670 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
VIMP08670 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VIMP08670 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms