Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
TNFP01375 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.06■□□□□ 0.32
TNFP01375 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.06■□□□□ 0.32
TNFP01375 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.05■□□□□ 0.32
TNFP01375 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TNFP01375 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TNFP01375 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.05■□□□□ 0.32
TNFP01375 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.05■□□□□ 0.32
TNFP01375 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.05■□□□□ 0.32
TNFP01375 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
TNFP01375 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TNFP01375 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.05■□□□□ 0.32
TNFP01375 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
TNFP01375 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TNFP01375 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TNFP01375 MIR1233-2-201ENST00000408138 82 ntBASIC17.05■□□□□ 0.32
TNFP01375 MIR1233-1-201ENST00000408722 82 ntBASIC17.05■□□□□ 0.32
TNFP01375 ACTG1P4-201ENST00000425123 1122 ntBASIC17.05■□□□□ 0.32
TNFP01375 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC17.05■□□□□ 0.32
TNFP01375 AC108073.2-201ENST00000464002 357 ntBASIC17.05■□□□□ 0.32
TNFP01375 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.05■□□□□ 0.32
TNFP01375 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.05■□□□□ 0.32
TNFP01375 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.05■□□□□ 0.32
TNFP01375 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.05■□□□□ 0.32
TNFP01375 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.05■□□□□ 0.32
TNFP01375 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.05■□□□□ 0.32
TNFP01375 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.05■□□□□ 0.32
TNFP01375 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
TNFP01375 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TNFP01375 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.05■□□□□ 0.32
TNFP01375 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
TNFP01375 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
TNFP01375 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
TNFP01375 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
TNFP01375 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TNFP01375 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
TNFP01375 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TNFP01375 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TNFP01375 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
TNFP01375 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TNFP01375 AC046185.3-201ENST00000623228 1824 ntBASIC17.05■□□□□ 0.32
TNFP01375 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TNFP01375 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TNFP01375 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TNFP01375 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.04■□□□□ 0.32
TNFP01375 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
TNFP01375 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
TNFP01375 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TNFP01375 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TNFP01375 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.04■□□□□ 0.32
TNFP01375 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TNFP01375 AL354751.1-201ENST00000412768 1863 ntBASIC17.04■□□□□ 0.32
TNFP01375 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TNFP01375 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
TNFP01375 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TNFP01375 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TNFP01375 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.04■□□□□ 0.32
TNFP01375 PTCHD3P3-201ENST00000403073 906 ntBASIC17.04■□□□□ 0.32
TNFP01375 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC17.04■□□□□ 0.32
TNFP01375 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.04■□□□□ 0.32
TNFP01375 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
TNFP01375 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.04■□□□□ 0.32
TNFP01375 AL139327.4-201ENST00000612362 153 ntBASIC17.04■□□□□ 0.32
TNFP01375 GGTLC5P-201ENST00000617623 998 ntBASIC17.04■□□□□ 0.32
TNFP01375 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
TNFP01375 AC004790.2-201ENST00000623588 572 ntBASIC17.04■□□□□ 0.32
TNFP01375 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.04■□□□□ 0.32
TNFP01375 AL805961.1-202ENST00000641562 540 ntBASIC17.04■□□□□ 0.32
TNFP01375 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TNFP01375 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.04■□□□□ 0.32
TNFP01375 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.04■□□□□ 0.32
TNFP01375 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
TNFP01375 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TNFP01375 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TNFP01375 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TNFP01375 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TNFP01375 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
TNFP01375 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
TNFP01375 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
TNFP01375 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TNFP01375 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
TNFP01375 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TNFP01375 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
TNFP01375 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TNFP01375 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TNFP01375 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.03■□□□□ 0.32
TNFP01375 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TNFP01375 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TNFP01375 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TNFP01375 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.03■□□□□ 0.32
TNFP01375 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TNFP01375 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
TNFP01375 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
TNFP01375 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TNFP01375 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TNFP01375 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
TNFP01375 AC135050.7-201ENST00000624508 2218 ntBASIC17.03■□□□□ 0.32
TNFP01375 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TNFP01375 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TNFP01375 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms