Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFBP01127 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFBP01127 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
PDGFBP01127 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFBP01127 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.44■□□□□ 0.38
PDGFBP01127 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFBP01127 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
PDGFBP01127 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.44■□□□□ 0.38
PDGFBP01127 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFBP01127 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFBP01127 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.44■□□□□ 0.38
PDGFBP01127 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC17.44■□□□□ 0.38
PDGFBP01127 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFBP01127 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFBP01127 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFBP01127 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC17.44■□□□□ 0.38
PDGFBP01127 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFBP01127 GPR53P-205ENST00000457298 1084 ntBASIC17.44■□□□□ 0.38
PDGFBP01127 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFBP01127 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC17.44■□□□□ 0.38
PDGFBP01127 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC17.44■□□□□ 0.38
PDGFBP01127 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC17.44■□□□□ 0.38
PDGFBP01127 AL645728.2-201ENST00000641974 660 ntBASIC17.44■□□□□ 0.38
PDGFBP01127 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC17.44■□□□□ 0.38
PDGFBP01127 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFBP01127 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFBP01127 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFBP01127 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
PDGFBP01127 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFBP01127 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
PDGFBP01127 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFBP01127 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFBP01127 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFBP01127 AC009949.1-201ENST00000623048 1830 ntBASIC17.43■□□□□ 0.38
PDGFBP01127 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFBP01127 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFBP01127 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.43■□□□□ 0.38
PDGFBP01127 TMPRSS11CP-201ENST00000453277 683 ntBASIC17.43■□□□□ 0.38
PDGFBP01127 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.43■□□□□ 0.38
PDGFBP01127 AC126763.1-201ENST00000552015 2118 ntBASIC17.43■□□□□ 0.38
PDGFBP01127 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
PDGFBP01127 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC17.43■□□□□ 0.38
PDGFBP01127 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.43■□□□□ 0.38
PDGFBP01127 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFBP01127 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFBP01127 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFBP01127 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.43■□□□□ 0.38
PDGFBP01127 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFBP01127 AC129492.6-201ENST00000611383 1305 ntBASIC17.43■□□□□ 0.38
PDGFBP01127 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
PDGFBP01127 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFBP01127 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDGFBP01127 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
PDGFBP01127 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.42■□□□□ 0.38
PDGFBP01127 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDGFBP01127 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.42■□□□□ 0.38
PDGFBP01127 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDGFBP01127 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
PDGFBP01127 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.42■□□□□ 0.38
PDGFBP01127 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDGFBP01127 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDGFBP01127 PTPA-220ENST00000436883 532 ntTSL 4 BASIC17.42■□□□□ 0.38
PDGFBP01127 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC17.42■□□□□ 0.38
PDGFBP01127 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.42■□□□□ 0.38
PDGFBP01127 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.42■□□□□ 0.38
PDGFBP01127 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PDGFBP01127 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC17.42■□□□□ 0.38
PDGFBP01127 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC17.42■□□□□ 0.38
PDGFBP01127 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.42■□□□□ 0.38
PDGFBP01127 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDGFBP01127 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
PDGFBP01127 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDGFBP01127 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.42■□□□□ 0.38
PDGFBP01127 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDGFBP01127 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.42■□□□□ 0.38
PDGFBP01127 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PDGFBP01127 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
PDGFBP01127 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDGFBP01127 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDGFBP01127 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.41■□□□□ 0.38
PDGFBP01127 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDGFBP01127 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PDGFBP01127 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDGFBP01127 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.41■□□□□ 0.38
PDGFBP01127 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.41■□□□□ 0.38
PDGFBP01127 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
PDGFBP01127 AC100757.3-201ENST00000622361 1406 ntBASIC17.41■□□□□ 0.38
PDGFBP01127 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDGFBP01127 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDGFBP01127 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PDGFBP01127 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDGFBP01127 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDGFBP01127 CALY-202ENST00000368555 783 ntTSL 2 BASIC17.41■□□□□ 0.38
PDGFBP01127 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC17.41■□□□□ 0.38
PDGFBP01127 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.41■□□□□ 0.38
PDGFBP01127 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
PDGFBP01127 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PDGFBP01127 TSSK5P-201ENST00000423978 907 ntBASIC17.41■□□□□ 0.38
PDGFBP01127 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.41■□□□□ 0.38
PDGFBP01127 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms