Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CACNA1FO60840 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CACNA1FO60840 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CACNA1FO60840 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CACNA1FO60840 MED15P5-201ENST00000423150 992 ntBASIC21.83■■□□□ 1.09
CACNA1FO60840 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC21.83■■□□□ 1.09
CACNA1FO60840 THTPA-204ENST00000554970 569 ntTSL 4 BASIC21.83■■□□□ 1.09
CACNA1FO60840 THTPA-206ENST00000556015 535 ntTSL 3 BASIC21.83■■□□□ 1.09
CACNA1FO60840 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC21.83■■□□□ 1.09
CACNA1FO60840 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CACNA1FO60840 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC21.83■■□□□ 1.09
CACNA1FO60840 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
CACNA1FO60840 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
CACNA1FO60840 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.08
CACNA1FO60840 AC104109.2-201ENST00000602919 1418 ntBASIC21.83■■□□□ 1.08
CACNA1FO60840 BEX3-201ENST00000361298 921 ntTSL 2 BASIC21.83■■□□□ 1.08
CACNA1FO60840 ADH5P3-201ENST00000433842 1137 ntBASIC21.83■■□□□ 1.08
CACNA1FO60840 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC21.83■■□□□ 1.08
CACNA1FO60840 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
CACNA1FO60840 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC21.83■■□□□ 1.08
CACNA1FO60840 CAND2-206ENST00000626378 333 ntTSL 5 BASIC21.83■■□□□ 1.08
CACNA1FO60840 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CACNA1FO60840 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CACNA1FO60840 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CACNA1FO60840 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CACNA1FO60840 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CACNA1FO60840 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CACNA1FO60840 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC21.82■■□□□ 1.08
CACNA1FO60840 SLC25A6P2-201ENST00000497974 877 ntBASIC21.82■■□□□ 1.08
CACNA1FO60840 CYB561-216ENST00000582297 897 ntTSL 3 BASIC21.82■■□□□ 1.08
CACNA1FO60840 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
CACNA1FO60840 HOTTIP_1.1-201ENST00000620415 57 ntBASIC21.82■■□□□ 1.08
CACNA1FO60840 AC010507.1-201ENST00000633895 436 ntBASIC21.82■■□□□ 1.08
CACNA1FO60840 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CACNA1FO60840 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CACNA1FO60840 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CACNA1FO60840 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CACNA1FO60840 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CACNA1FO60840 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CACNA1FO60840 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CACNA1FO60840 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CACNA1FO60840 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CACNA1FO60840 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
CACNA1FO60840 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC21.81■■□□□ 1.08
CACNA1FO60840 POLD2P1-201ENST00000511220 997 ntBASIC21.81■■□□□ 1.08
CACNA1FO60840 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC21.81■■□□□ 1.08
CACNA1FO60840 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
CACNA1FO60840 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CACNA1FO60840 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
CACNA1FO60840 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
CACNA1FO60840 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC21.81■■□□□ 1.08
CACNA1FO60840 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
CACNA1FO60840 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC21.81■■□□□ 1.08
CACNA1FO60840 ZNF259P1-201ENST00000407656 1365 ntBASIC21.81■■□□□ 1.08
CACNA1FO60840 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CACNA1FO60840 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC21.81■■□□□ 1.08
CACNA1FO60840 COX10-202ENST00000429152 875 ntTSL 2 BASIC21.81■■□□□ 1.08
CACNA1FO60840 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CACNA1FO60840 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
CACNA1FO60840 AC005593.1-201ENST00000624894 515 ntBASIC21.81■■□□□ 1.08
CACNA1FO60840 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CACNA1FO60840 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CACNA1FO60840 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
CACNA1FO60840 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CACNA1FO60840 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC21.8■■□□□ 1.08
CACNA1FO60840 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC21.8■■□□□ 1.08
CACNA1FO60840 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC21.8■■□□□ 1.08
CACNA1FO60840 SLC4A1APP2-201ENST00000424054 1259 ntBASIC21.8■■□□□ 1.08
CACNA1FO60840 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC21.8■■□□□ 1.08
CACNA1FO60840 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC21.8■■□□□ 1.08
CACNA1FO60840 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC21.8■■□□□ 1.08
CACNA1FO60840 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC21.8■■□□□ 1.08
CACNA1FO60840 CALM1-205ENST00000553542 877 ntTSL 5 BASIC21.8■■□□□ 1.08
CACNA1FO60840 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
CACNA1FO60840 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CACNA1FO60840 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC21.8■■□□□ 1.08
CACNA1FO60840 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC21.8■■□□□ 1.08
CACNA1FO60840 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CACNA1FO60840 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
CACNA1FO60840 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC21.8■■□□□ 1.08
CACNA1FO60840 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC21.8■■□□□ 1.08
CACNA1FO60840 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CACNA1FO60840 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CACNA1FO60840 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CACNA1FO60840 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC21.8■■□□□ 1.08
CACNA1FO60840 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC21.8■■□□□ 1.08
CACNA1FO60840 BANP-227ENST00000626016 2144 ntTSL 2 BASIC21.8■■□□□ 1.08
CACNA1FO60840 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CACNA1FO60840 HNRNPA1P28-201ENST00000424481 961 ntBASIC21.79■■□□□ 1.08
CACNA1FO60840 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CACNA1FO60840 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC21.79■■□□□ 1.08
CACNA1FO60840 MIR4751-201ENST00000578027 74 ntBASIC21.79■■□□□ 1.08
CACNA1FO60840 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC21.79■■□□□ 1.08
CACNA1FO60840 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC21.79■■□□□ 1.08
CACNA1FO60840 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC21.79■■□□□ 1.08
CACNA1FO60840 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CACNA1FO60840 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC21.79■■□□□ 1.08
CACNA1FO60840 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC21.79■■□□□ 1.08
CACNA1FO60840 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC21.79■■□□□ 1.08
CACNA1FO60840 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms