Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 AC116407.3-201ENST00000623905 1129 ntBASIC17.22■□□□□ 0.35
TMX2-CTNND1H3BSU7 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
TMX2-CTNND1H3BSU7 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TMX2-CTNND1H3BSU7 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TMX2-CTNND1H3BSU7 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TMX2-CTNND1H3BSU7 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TMX2-CTNND1H3BSU7 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TMX2-CTNND1H3BSU7 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
TMX2-CTNND1H3BSU7 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
TMX2-CTNND1H3BSU7 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TMX2-CTNND1H3BSU7 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
TMX2-CTNND1H3BSU7 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TMX2-CTNND1H3BSU7 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TMX2-CTNND1H3BSU7 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TMX2-CTNND1H3BSU7 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 LINC00602-201ENST00000629776 2065 ntBASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 MIR1233-2-201ENST00000408138 82 ntBASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 MIR1233-1-201ENST00000408722 82 ntBASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 MIR7706-201ENST00000613747 67 ntBASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.21■□□□□ 0.35
TMX2-CTNND1H3BSU7 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
TMX2-CTNND1H3BSU7 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
TMX2-CTNND1H3BSU7 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 FABP5-202ENST00000396359 986 ntTSL 5 BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 BX842568.4-201ENST00000421222 227 ntBASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 POLD2P1-201ENST00000511220 997 ntBASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 AC145285.3-201ENST00000564603 959 ntBASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 GNAS-203ENST00000306120 1878 ntBASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TMX2-CTNND1H3BSU7 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms