Protein–RNA interactions for Protein: Q9HBL6

LRTM1, Leucine-rich repeat and transmembrane domain-containing protein 1, humanhuman

Predictions only

Length 345 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRTM1Q9HBL6 AL359258.2-201ENST00000564063 1566 ntBASIC23.41■■□□□ 1.34
LRTM1Q9HBL6 ERN1-208ENST00000606895 2068 ntBASIC23.41■■□□□ 1.34
LRTM1Q9HBL6 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
LRTM1Q9HBL6 AC010501.1-201ENST00000606270 1962 ntBASIC23.41■■□□□ 1.34
LRTM1Q9HBL6 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC23.41■■□□□ 1.34
LRTM1Q9HBL6 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
LRTM1Q9HBL6 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC23.41■■□□□ 1.34
LRTM1Q9HBL6 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
LRTM1Q9HBL6 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC23.4■■□□□ 1.34
LRTM1Q9HBL6 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
LRTM1Q9HBL6 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
LRTM1Q9HBL6 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC23.39■■□□□ 1.34
LRTM1Q9HBL6 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
LRTM1Q9HBL6 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC23.39■■□□□ 1.33
LRTM1Q9HBL6 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
LRTM1Q9HBL6 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
LRTM1Q9HBL6 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
LRTM1Q9HBL6 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
LRTM1Q9HBL6 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC23.38■■□□□ 1.33
LRTM1Q9HBL6 CR559946.2-201ENST00000623684 991 ntBASIC23.38■■□□□ 1.33
LRTM1Q9HBL6 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
LRTM1Q9HBL6 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC23.38■■□□□ 1.33
LRTM1Q9HBL6 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
LRTM1Q9HBL6 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC23.36■■□□□ 1.33
LRTM1Q9HBL6 ABHD17AP4-201ENST00000411545 909 ntBASIC23.36■■□□□ 1.33
LRTM1Q9HBL6 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
LRTM1Q9HBL6 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
LRTM1Q9HBL6 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
LRTM1Q9HBL6 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
LRTM1Q9HBL6 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC23.34■■□□□ 1.33
LRTM1Q9HBL6 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC23.34■■□□□ 1.33
LRTM1Q9HBL6 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC23.34■■□□□ 1.33
LRTM1Q9HBL6 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
LRTM1Q9HBL6 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
LRTM1Q9HBL6 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
LRTM1Q9HBL6 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC23.33■■□□□ 1.33
LRTM1Q9HBL6 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
LRTM1Q9HBL6 AL359504.2-201ENST00000605506 1601 ntBASIC23.33■■□□□ 1.32
LRTM1Q9HBL6 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
LRTM1Q9HBL6 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
LRTM1Q9HBL6 MED25-210ENST00000612854 801 ntTSL 5 BASIC23.32■■□□□ 1.32
LRTM1Q9HBL6 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
LRTM1Q9HBL6 MED25-214ENST00000622402 642 ntTSL 5 BASIC23.32■■□□□ 1.32
LRTM1Q9HBL6 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
LRTM1Q9HBL6 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
LRTM1Q9HBL6 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
LRTM1Q9HBL6 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
LRTM1Q9HBL6 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC23.31■■□□□ 1.32
LRTM1Q9HBL6 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
LRTM1Q9HBL6 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
LRTM1Q9HBL6 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC23.3■■□□□ 1.32
LRTM1Q9HBL6 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
LRTM1Q9HBL6 GDI1-215ENST00000630693 786 ntTSL 4 BASIC23.3■■□□□ 1.32
LRTM1Q9HBL6 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
LRTM1Q9HBL6 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC23.29■■□□□ 1.32
LRTM1Q9HBL6 MIR3648-2-201ENST00000581792 180 ntBASIC23.29■■□□□ 1.32
LRTM1Q9HBL6 MIR3648-1-201ENST00000615959 180 ntBASIC23.29■■□□□ 1.32
LRTM1Q9HBL6 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
LRTM1Q9HBL6 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
LRTM1Q9HBL6 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
LRTM1Q9HBL6 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC23.28■■□□□ 1.32
LRTM1Q9HBL6 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
LRTM1Q9HBL6 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
LRTM1Q9HBL6 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
LRTM1Q9HBL6 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.28■■□□□ 1.32
LRTM1Q9HBL6 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC23.28■■□□□ 1.32
LRTM1Q9HBL6 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
LRTM1Q9HBL6 MACF1-219ENST00000484793 834 ntTSL 2 BASIC23.27■■□□□ 1.32
LRTM1Q9HBL6 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.27■■□□□ 1.32
LRTM1Q9HBL6 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
LRTM1Q9HBL6 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
LRTM1Q9HBL6 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
LRTM1Q9HBL6 AC126177.7-201ENST00000547904 679 ntBASIC23.26■■□□□ 1.31
LRTM1Q9HBL6 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
LRTM1Q9HBL6 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
LRTM1Q9HBL6 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
LRTM1Q9HBL6 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC23.26■■□□□ 1.31
LRTM1Q9HBL6 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
LRTM1Q9HBL6 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
LRTM1Q9HBL6 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
LRTM1Q9HBL6 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC23.25■■□□□ 1.31
LRTM1Q9HBL6 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC23.25■■□□□ 1.31
LRTM1Q9HBL6 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
LRTM1Q9HBL6 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
LRTM1Q9HBL6 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC23.24■■□□□ 1.31
LRTM1Q9HBL6 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC23.24■■□□□ 1.31
LRTM1Q9HBL6 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
LRTM1Q9HBL6 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
LRTM1Q9HBL6 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
LRTM1Q9HBL6 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC23.23■■□□□ 1.31
LRTM1Q9HBL6 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LRTM1Q9HBL6 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LRTM1Q9HBL6 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LRTM1Q9HBL6 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC23.23■■□□□ 1.31
LRTM1Q9HBL6 METRNL-202ENST00000570778 967 ntTSL 5 BASIC23.23■■□□□ 1.31
LRTM1Q9HBL6 AC016575.1-201ENST00000607026 382 ntBASIC23.23■■□□□ 1.31
LRTM1Q9HBL6 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
LRTM1Q9HBL6 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LRTM1Q9HBL6 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LRTM1Q9HBL6 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms