Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 AL449106.1-201ENST00000608517 1980 ntBASIC20.17■□□□□ 0.82
SSX3Q99909 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SSX3Q99909 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SSX3Q99909 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC20.17■□□□□ 0.82
SSX3Q99909 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SSX3Q99909 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SSX3Q99909 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SSX3Q99909 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SSX3Q99909 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC20.16■□□□□ 0.82
SSX3Q99909 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
SSX3Q99909 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SSX3Q99909 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC20.16■□□□□ 0.82
SSX3Q99909 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SSX3Q99909 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SSX3Q99909 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC20.15■□□□□ 0.82
SSX3Q99909 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SSX3Q99909 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SSX3Q99909 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
SSX3Q99909 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.14■□□□□ 0.81
SSX3Q99909 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SSX3Q99909 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
SSX3Q99909 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.14■□□□□ 0.81
SSX3Q99909 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SSX3Q99909 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SSX3Q99909 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SSX3Q99909 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SSX3Q99909 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
SSX3Q99909 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
SSX3Q99909 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SSX3Q99909 MED25-210ENST00000612854 801 ntTSL 5 BASIC20.13■□□□□ 0.81
SSX3Q99909 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SSX3Q99909 MED25-214ENST00000622402 642 ntTSL 5 BASIC20.13■□□□□ 0.81
SSX3Q99909 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
SSX3Q99909 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC20.13■□□□□ 0.81
SSX3Q99909 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SSX3Q99909 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
SSX3Q99909 ABHD17AP5-201ENST00000580133 923 ntBASIC20.12■□□□□ 0.81
SSX3Q99909 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC20.12■□□□□ 0.81
SSX3Q99909 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
SSX3Q99909 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SSX3Q99909 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SSX3Q99909 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC20.11■□□□□ 0.81
SSX3Q99909 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SSX3Q99909 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SSX3Q99909 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SSX3Q99909 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SSX3Q99909 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SSX3Q99909 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SSX3Q99909 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SSX3Q99909 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC20.1■□□□□ 0.81
SSX3Q99909 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SSX3Q99909 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SSX3Q99909 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SSX3Q99909 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC20.1■□□□□ 0.81
SSX3Q99909 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
SSX3Q99909 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SSX3Q99909 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SSX3Q99909 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC20.09■□□□□ 0.81
SSX3Q99909 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC20.09■□□□□ 0.81
SSX3Q99909 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
SSX3Q99909 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
SSX3Q99909 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
SSX3Q99909 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SSX3Q99909 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC20.08■□□□□ 0.81
SSX3Q99909 PROC-203ENST00000409048 1586 ntTSL 5 BASIC20.08■□□□□ 0.81
SSX3Q99909 AL359258.2-201ENST00000564063 1566 ntBASIC20.08■□□□□ 0.81
SSX3Q99909 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
SSX3Q99909 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SSX3Q99909 AC092296.2-201ENST00000589470 999 ntBASIC20.08■□□□□ 0.81
SSX3Q99909 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SSX3Q99909 AC018358.1-201ENST00000631079 1402 ntBASIC20.08■□□□□ 0.8
SSX3Q99909 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SSX3Q99909 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC20.08■□□□□ 0.8
SSX3Q99909 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.08■□□□□ 0.8
SSX3Q99909 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SSX3Q99909 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC20.07■□□□□ 0.8
SSX3Q99909 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SSX3Q99909 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SSX3Q99909 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SSX3Q99909 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
SSX3Q99909 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC20.06■□□□□ 0.8
SSX3Q99909 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC20.06■□□□□ 0.8
SSX3Q99909 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SSX3Q99909 ECEL1P2-201ENST00000461596 1295 ntBASIC20.05■□□□□ 0.8
SSX3Q99909 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SSX3Q99909 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SSX3Q99909 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
SSX3Q99909 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SSX3Q99909 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SSX3Q99909 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SSX3Q99909 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC20.04■□□□□ 0.8
SSX3Q99909 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SSX3Q99909 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SSX3Q99909 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC20.04■□□□□ 0.8
SSX3Q99909 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SSX3Q99909 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.03■□□□□ 0.8
SSX3Q99909 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SSX3Q99909 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SSX3Q99909 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
SSX3Q99909 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms