Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SDCBPO00560 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC20.56■□□□□ 0.88
SDCBPO00560 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SDCBPO00560 WHAMMP3-201ENST00000611636 1609 ntBASIC20.56■□□□□ 0.88
SDCBPO00560 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SDCBPO00560 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SDCBPO00560 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.55■□□□□ 0.88
SDCBPO00560 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SDCBPO00560 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SDCBPO00560 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
SDCBPO00560 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SDCBPO00560 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC20.54■□□□□ 0.88
SDCBPO00560 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.54■□□□□ 0.88
SDCBPO00560 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SDCBPO00560 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
SDCBPO00560 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SDCBPO00560 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SDCBPO00560 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SDCBPO00560 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC20.53■□□□□ 0.88
SDCBPO00560 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SDCBPO00560 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
SDCBPO00560 ABHD17AP4-201ENST00000411545 909 ntBASIC20.52■□□□□ 0.88
SDCBPO00560 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC20.52■□□□□ 0.88
SDCBPO00560 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SDCBPO00560 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SDCBPO00560 ERN1-208ENST00000606895 2068 ntBASIC20.52■□□□□ 0.87
SDCBPO00560 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC20.51■□□□□ 0.87
SDCBPO00560 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SDCBPO00560 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SDCBPO00560 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SDCBPO00560 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SDCBPO00560 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SDCBPO00560 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SDCBPO00560 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SDCBPO00560 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC20.5■□□□□ 0.87
SDCBPO00560 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SDCBPO00560 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SDCBPO00560 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.5■□□□□ 0.87
SDCBPO00560 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
SDCBPO00560 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SDCBPO00560 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SDCBPO00560 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SDCBPO00560 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC20.49■□□□□ 0.87
SDCBPO00560 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
SDCBPO00560 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SDCBPO00560 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SDCBPO00560 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SDCBPO00560 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC20.48■□□□□ 0.87
SDCBPO00560 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SDCBPO00560 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SDCBPO00560 HES6-205ENST00000409356 528 ntTSL 2 BASIC20.48■□□□□ 0.87
SDCBPO00560 AC008813.1-201ENST00000536597 885 ntBASIC20.48■□□□□ 0.87
SDCBPO00560 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SDCBPO00560 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.47■□□□□ 0.87
SDCBPO00560 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
SDCBPO00560 AGPS-202ENST00000409888 815 ntTSL 4 BASIC20.47■□□□□ 0.87
SDCBPO00560 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC20.47■□□□□ 0.87
SDCBPO00560 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SDCBPO00560 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SDCBPO00560 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC20.46■□□□□ 0.87
SDCBPO00560 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SDCBPO00560 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SDCBPO00560 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SDCBPO00560 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
SDCBPO00560 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SDCBPO00560 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SDCBPO00560 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.46■□□□□ 0.87
SDCBPO00560 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SDCBPO00560 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SDCBPO00560 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
SDCBPO00560 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SDCBPO00560 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SDCBPO00560 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SDCBPO00560 AC010501.1-201ENST00000606270 1962 ntBASIC20.45■□□□□ 0.86
SDCBPO00560 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SDCBPO00560 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SDCBPO00560 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SDCBPO00560 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
SDCBPO00560 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC20.43■□□□□ 0.86
SDCBPO00560 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SDCBPO00560 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SDCBPO00560 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC20.43■□□□□ 0.86
SDCBPO00560 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SDCBPO00560 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC20.43■□□□□ 0.86
SDCBPO00560 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
SDCBPO00560 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
SDCBPO00560 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
SDCBPO00560 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SDCBPO00560 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC20.41■□□□□ 0.86
SDCBPO00560 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SDCBPO00560 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SDCBPO00560 CR559946.2-201ENST00000623684 991 ntBASIC20.41■□□□□ 0.86
SDCBPO00560 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SDCBPO00560 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
SDCBPO00560 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SDCBPO00560 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
SDCBPO00560 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
SDCBPO00560 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
SDCBPO00560 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
SDCBPO00560 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms