Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.97■□□□□ 0.47
TDP1Q9NUW8 DNAJB3-202ENST00000449667 1266 ntBASIC17.97■□□□□ 0.47
TDP1Q9NUW8 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.97■□□□□ 0.47
TDP1Q9NUW8 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.97■□□□□ 0.47
TDP1Q9NUW8 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.97■□□□□ 0.47
TDP1Q9NUW8 AC096734.2-201ENST00000562054 433 ntBASIC17.97■□□□□ 0.47
TDP1Q9NUW8 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.97■□□□□ 0.47
TDP1Q9NUW8 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC17.97■□□□□ 0.47
TDP1Q9NUW8 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
TDP1Q9NUW8 C20orf181-201ENST00000623918 480 ntBASIC17.97■□□□□ 0.47
TDP1Q9NUW8 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TDP1Q9NUW8 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TDP1Q9NUW8 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
TDP1Q9NUW8 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.97■□□□□ 0.47
TDP1Q9NUW8 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TDP1Q9NUW8 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.97■□□□□ 0.47
TDP1Q9NUW8 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
TDP1Q9NUW8 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
TDP1Q9NUW8 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.97■□□□□ 0.47
TDP1Q9NUW8 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TDP1Q9NUW8 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TDP1Q9NUW8 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TDP1Q9NUW8 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TDP1Q9NUW8 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TDP1Q9NUW8 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
TDP1Q9NUW8 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TDP1Q9NUW8 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TDP1Q9NUW8 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TDP1Q9NUW8 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TDP1Q9NUW8 ABALON-201ENST00000629058 1903 ntBASIC17.96■□□□□ 0.47
TDP1Q9NUW8 AC046185.3-201ENST00000623228 1824 ntBASIC17.96■□□□□ 0.47
TDP1Q9NUW8 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TDP1Q9NUW8 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
TDP1Q9NUW8 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.96■□□□□ 0.47
TDP1Q9NUW8 AP006288.1-201ENST00000446065 395 ntBASIC17.96■□□□□ 0.47
TDP1Q9NUW8 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TDP1Q9NUW8 YBX1P5-201ENST00000509441 847 ntBASIC17.96■□□□□ 0.47
TDP1Q9NUW8 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.96■□□□□ 0.47
TDP1Q9NUW8 OR7E47P-204ENST00000575924 449 ntBASIC17.96■□□□□ 0.47
TDP1Q9NUW8 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.96■□□□□ 0.47
TDP1Q9NUW8 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.96■□□□□ 0.47
TDP1Q9NUW8 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
TDP1Q9NUW8 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.96■□□□□ 0.47
TDP1Q9NUW8 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
TDP1Q9NUW8 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
TDP1Q9NUW8 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
TDP1Q9NUW8 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TDP1Q9NUW8 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TDP1Q9NUW8 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.96■□□□□ 0.47
TDP1Q9NUW8 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.96■□□□□ 0.47
TDP1Q9NUW8 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TDP1Q9NUW8 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TDP1Q9NUW8 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.96■□□□□ 0.47
TDP1Q9NUW8 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
TDP1Q9NUW8 AL590787.1-201ENST00000568856 1315 ntBASIC17.96■□□□□ 0.46
TDP1Q9NUW8 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.96■□□□□ 0.46
TDP1Q9NUW8 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 AC004877.2-201ENST00000623941 599 ntBASIC17.95■□□□□ 0.46
TDP1Q9NUW8 AC010507.1-201ENST00000633895 436 ntBASIC17.95■□□□□ 0.46
TDP1Q9NUW8 AL135999.2-201ENST00000622438 1686 ntBASIC17.95■□□□□ 0.46
TDP1Q9NUW8 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TDP1Q9NUW8 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TDP1Q9NUW8 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TDP1Q9NUW8 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TDP1Q9NUW8 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TDP1Q9NUW8 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TDP1Q9NUW8 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TDP1Q9NUW8 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms