Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 AC009336.1-201ENST00000608941 1553 ntBASIC17.46■□□□□ 0.39
TREX1Q9NSU2 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 RCN1P2-201ENST00000398357 915 ntBASIC17.46■□□□□ 0.39
TREX1Q9NSU2 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 MINOS1P3-201ENST00000457048 203 ntBASIC17.46■□□□□ 0.39
TREX1Q9NSU2 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 AC091076.1-201ENST00000610741 619 ntBASIC17.46■□□□□ 0.39
TREX1Q9NSU2 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 LINC02012-201ENST00000608206 1725 ntBASIC17.46■□□□□ 0.39
TREX1Q9NSU2 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TREX1Q9NSU2 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
TREX1Q9NSU2 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.38
TREX1Q9NSU2 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 AC096582.2-201ENST00000510860 516 ntBASIC17.45■□□□□ 0.38
TREX1Q9NSU2 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TREX1Q9NSU2 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 AC060834.1-201ENST00000443027 2032 ntBASIC17.44■□□□□ 0.38
TREX1Q9NSU2 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 AC074051.2-201ENST00000565115 352 ntBASIC17.44■□□□□ 0.38
TREX1Q9NSU2 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 AC092329.2-201ENST00000598402 547 ntBASIC17.44■□□□□ 0.38
TREX1Q9NSU2 AC010331.1-201ENST00000611423 582 ntBASIC17.44■□□□□ 0.38
TREX1Q9NSU2 AC114341.1-201ENST00000618070 349 ntBASIC17.44■□□□□ 0.38
TREX1Q9NSU2 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TREX1Q9NSU2 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms