Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 AC132938.5-201ENST00000624980 1813 ntBASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 AC073621.1-201ENST00000392730 636 ntBASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 AL020989.1-201ENST00000422979 469 ntBASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 COX10-202ENST00000429152 875 ntTSL 2 BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 POLD2P1-201ENST00000511220 997 ntBASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 PGAM5P1-201ENST00000518923 814 ntBASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 RPS29-206ENST00000557111 488 ntTSL 2 BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 AC006557.2-201ENST00000592985 1240 ntBASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 AC019129.2-201ENST00000609837 1235 ntBASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 PGM5P2-202ENST00000637225 1043 ntBASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAIPQ9BWF2 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 AP002414.3-201ENST00000589352 1468 ntBASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 AC020916.1-201ENST00000587762 1774 ntBASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 TERC-201ENST00000602385 541 ntBASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC19.17■□□□□ 0.66
TRAIPQ9BWF2 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 KRT18P13-201ENST00000400056 1290 ntBASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 CENPM-204ENST00000402420 688 ntTSL 5 BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 UNC93B6-202ENST00000528242 690 ntBASIC19.16■□□□□ 0.66
TRAIPQ9BWF2 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms