Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC28.64■■■□□ 2.17
IFT140Q96RY7 HNRNPA3P1-201ENST00000401429 1139 ntBASIC28.64■■■□□ 2.17
IFT140Q96RY7 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC28.64■■■□□ 2.17
IFT140Q96RY7 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC28.64■■■□□ 2.17
IFT140Q96RY7 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC28.64■■■□□ 2.17
IFT140Q96RY7 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.17
IFT140Q96RY7 HNRNPA3P5-201ENST00000455201 833 ntBASIC28.64■■■□□ 2.17
IFT140Q96RY7 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC28.64■■■□□ 2.17
IFT140Q96RY7 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC28.64■■■□□ 2.17
IFT140Q96RY7 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.17
IFT140Q96RY7 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC28.64■■■□□ 2.17
IFT140Q96RY7 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC28.64■■■□□ 2.17
IFT140Q96RY7 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.17
IFT140Q96RY7 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.17
IFT140Q96RY7 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC28.64■■■□□ 2.17
IFT140Q96RY7 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC28.63■■■□□ 2.17
IFT140Q96RY7 AC005332.7-201ENST00000614046 2005 ntBASIC28.63■■■□□ 2.17
IFT140Q96RY7 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
IFT140Q96RY7 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC28.63■■■□□ 2.17
IFT140Q96RY7 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC28.63■■■□□ 2.17
IFT140Q96RY7 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC28.63■■■□□ 2.17
IFT140Q96RY7 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
IFT140Q96RY7 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
IFT140Q96RY7 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC28.63■■■□□ 2.17
IFT140Q96RY7 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC28.63■■■□□ 2.17
IFT140Q96RY7 MIR3909-201ENST00000579518 119 ntBASIC28.63■■■□□ 2.17
IFT140Q96RY7 AL162274.1-201ENST00000617191 1098 ntBASIC28.63■■■□□ 2.17
IFT140Q96RY7 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC28.63■■■□□ 2.17
IFT140Q96RY7 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC28.63■■■□□ 2.17
IFT140Q96RY7 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
IFT140Q96RY7 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
IFT140Q96RY7 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC28.63■■■□□ 2.17
IFT140Q96RY7 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC28.62■■■□□ 2.17
IFT140Q96RY7 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC28.62■■■□□ 2.17
IFT140Q96RY7 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
IFT140Q96RY7 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC28.62■■■□□ 2.17
IFT140Q96RY7 AC098614.1-201ENST00000368528 745 ntBASIC28.62■■■□□ 2.17
IFT140Q96RY7 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC28.62■■■□□ 2.17
IFT140Q96RY7 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC28.62■■■□□ 2.17
IFT140Q96RY7 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC28.62■■■□□ 2.17
IFT140Q96RY7 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
IFT140Q96RY7 HLA-V-204ENST00000476601 1289 ntBASIC28.62■■■□□ 2.17
IFT140Q96RY7 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC28.62■■■□□ 2.17
IFT140Q96RY7 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC28.62■■■□□ 2.17
IFT140Q96RY7 AC008738.7-201ENST00000609744 511 ntBASIC28.62■■■□□ 2.17
IFT140Q96RY7 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC28.62■■■□□ 2.17
IFT140Q96RY7 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
IFT140Q96RY7 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
IFT140Q96RY7 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC28.62■■■□□ 2.17
IFT140Q96RY7 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC28.62■■■□□ 2.17
IFT140Q96RY7 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
IFT140Q96RY7 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
IFT140Q96RY7 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
IFT140Q96RY7 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
IFT140Q96RY7 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC28.61■■■□□ 2.17
IFT140Q96RY7 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
IFT140Q96RY7 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC28.61■■■□□ 2.17
IFT140Q96RY7 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC28.61■■■□□ 2.17
IFT140Q96RY7 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC28.61■■■□□ 2.17
IFT140Q96RY7 Six3os1_5.1-201ENST00000611000 271 ntBASIC28.61■■■□□ 2.17
IFT140Q96RY7 MIR6805-201ENST00000615055 62 ntBASIC28.61■■■□□ 2.17
IFT140Q96RY7 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
IFT140Q96RY7 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC28.61■■■□□ 2.17
IFT140Q96RY7 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC28.61■■■□□ 2.17
IFT140Q96RY7 GRAMD4P3-201ENST00000621665 1669 ntBASIC28.61■■■□□ 2.17
IFT140Q96RY7 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
IFT140Q96RY7 AMT-250ENST00000637682 1823 ntTSL 5 BASIC28.61■■■□□ 2.17
IFT140Q96RY7 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC28.61■■■□□ 2.17
IFT140Q96RY7 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
IFT140Q96RY7 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
IFT140Q96RY7 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC28.6■■■□□ 2.17
IFT140Q96RY7 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
IFT140Q96RY7 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC28.6■■■□□ 2.17
IFT140Q96RY7 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
IFT140Q96RY7 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC28.6■■■□□ 2.17
IFT140Q96RY7 GPER1-207ENST00000619052 571 ntTSL 2 BASIC28.6■■■□□ 2.17
IFT140Q96RY7 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
IFT140Q96RY7 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
IFT140Q96RY7 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
IFT140Q96RY7 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC28.6■■■□□ 2.17
IFT140Q96RY7 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC28.59■■■□□ 2.17
IFT140Q96RY7 AC142381.1-201ENST00000426099 345 ntBASIC28.59■■■□□ 2.17
IFT140Q96RY7 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC28.59■■■□□ 2.17
IFT140Q96RY7 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC28.59■■■□□ 2.17
IFT140Q96RY7 AC084346.2-201ENST00000607097 949 ntBASIC28.59■■■□□ 2.17
IFT140Q96RY7 AL844908.2-201ENST00000609461 460 ntBASIC28.59■■■□□ 2.17
IFT140Q96RY7 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC28.59■■■□□ 2.17
IFT140Q96RY7 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC28.59■■■□□ 2.17
IFT140Q96RY7 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC28.59■■■□□ 2.17
IFT140Q96RY7 INE1-201ENST00000456273 945 ntBASIC28.59■■■□□ 2.17
IFT140Q96RY7 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC28.59■■■□□ 2.17
IFT140Q96RY7 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC28.59■■■□□ 2.17
IFT140Q96RY7 POLE2-203ENST00000553805 496 ntTSL 2 BASIC28.59■■■□□ 2.17
IFT140Q96RY7 MPI-209ENST00000564003 1195 ntTSL 2 BASIC28.59■■■□□ 2.17
IFT140Q96RY7 AC106886.1-201ENST00000568660 600 ntBASIC28.59■■■□□ 2.17
IFT140Q96RY7 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC28.59■■■□□ 2.17
IFT140Q96RY7 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC28.59■■■□□ 2.17
IFT140Q96RY7 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC28.58■■■□□ 2.17
IFT140Q96RY7 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
IFT140Q96RY7 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC28.58■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms