Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC23.08■■□□□ 1.29
USP54Q70EL1 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
USP54Q70EL1 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
USP54Q70EL1 SLC25A6P5-201ENST00000435663 894 ntBASIC23.08■■□□□ 1.29
USP54Q70EL1 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC23.08■■□□□ 1.29
USP54Q70EL1 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
USP54Q70EL1 AL390955.2-201ENST00000603032 514 ntBASIC23.08■■□□□ 1.29
USP54Q70EL1 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC23.08■■□□□ 1.29
USP54Q70EL1 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
USP54Q70EL1 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
USP54Q70EL1 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
USP54Q70EL1 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.28
USP54Q70EL1 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC23.08■■□□□ 1.28
USP54Q70EL1 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
USP54Q70EL1 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
USP54Q70EL1 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
USP54Q70EL1 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
USP54Q70EL1 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
USP54Q70EL1 FAM8A3P-201ENST00000427218 844 ntBASIC23.07■■□□□ 1.28
USP54Q70EL1 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC23.07■■□□□ 1.28
USP54Q70EL1 AC069335.1-201ENST00000489972 472 ntBASIC23.07■■□□□ 1.28
USP54Q70EL1 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
USP54Q70EL1 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
USP54Q70EL1 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC23.07■■□□□ 1.28
USP54Q70EL1 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC23.07■■□□□ 1.28
USP54Q70EL1 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
USP54Q70EL1 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC23.07■■□□□ 1.28
USP54Q70EL1 EGFEM1P-202ENST00000431685 1563 ntBASIC23.07■■□□□ 1.28
USP54Q70EL1 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC23.07■■□□□ 1.28
USP54Q70EL1 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
USP54Q70EL1 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC23.07■■□□□ 1.28
USP54Q70EL1 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC23.07■■□□□ 1.28
USP54Q70EL1 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
USP54Q70EL1 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
USP54Q70EL1 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
USP54Q70EL1 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC23.06■■□□□ 1.28
USP54Q70EL1 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
USP54Q70EL1 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC23.06■■□□□ 1.28
USP54Q70EL1 CFL1-212ENST00000531413 636 ntTSL 3 BASIC23.06■■□□□ 1.28
USP54Q70EL1 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC23.06■■□□□ 1.28
USP54Q70EL1 BSG-214ENST00000614867 960 ntTSL 3 BASIC23.06■■□□□ 1.28
USP54Q70EL1 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
USP54Q70EL1 LINC00628-201ENST00000628516 1289 ntBASIC23.06■■□□□ 1.28
USP54Q70EL1 AC084121.4-201ENST00000641598 221 ntBASIC23.06■■□□□ 1.28
USP54Q70EL1 AF228730.8-201ENST00000642140 221 ntBASIC23.06■■□□□ 1.28
USP54Q70EL1 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
USP54Q70EL1 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
USP54Q70EL1 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
USP54Q70EL1 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
USP54Q70EL1 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC23.06■■□□□ 1.28
USP54Q70EL1 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC23.06■■□□□ 1.28
USP54Q70EL1 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC23.06■■□□□ 1.28
USP54Q70EL1 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
USP54Q70EL1 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
USP54Q70EL1 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC23.06■■□□□ 1.28
USP54Q70EL1 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
USP54Q70EL1 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
USP54Q70EL1 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC23.06■■□□□ 1.28
USP54Q70EL1 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC23.06■■□□□ 1.28
USP54Q70EL1 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
USP54Q70EL1 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
USP54Q70EL1 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
USP54Q70EL1 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
USP54Q70EL1 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC23.06■■□□□ 1.28
USP54Q70EL1 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
USP54Q70EL1 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC23.06■■□□□ 1.28
USP54Q70EL1 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
USP54Q70EL1 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
USP54Q70EL1 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC23.06■■□□□ 1.28
USP54Q70EL1 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC23.06■■□□□ 1.28
USP54Q70EL1 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
USP54Q70EL1 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
USP54Q70EL1 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
USP54Q70EL1 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC23.05■■□□□ 1.28
USP54Q70EL1 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
USP54Q70EL1 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC23.05■■□□□ 1.28
USP54Q70EL1 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
USP54Q70EL1 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC23.05■■□□□ 1.28
USP54Q70EL1 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
USP54Q70EL1 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
USP54Q70EL1 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
USP54Q70EL1 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
USP54Q70EL1 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
USP54Q70EL1 KLK8-202ENST00000320838 456 ntTSL 5 BASIC23.05■■□□□ 1.28
USP54Q70EL1 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
USP54Q70EL1 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC23.05■■□□□ 1.28
USP54Q70EL1 CD81-202ENST00000381036 880 ntTSL 3 BASIC23.05■■□□□ 1.28
USP54Q70EL1 SYS1-203ENST00000414310 795 ntTSL 3 BASIC23.05■■□□□ 1.28
USP54Q70EL1 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC23.05■■□□□ 1.28
USP54Q70EL1 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
USP54Q70EL1 AC079140.1-201ENST00000508039 487 ntBASIC23.05■■□□□ 1.28
USP54Q70EL1 MIR4515-201ENST00000584082 81 ntBASIC23.05■■□□□ 1.28
USP54Q70EL1 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC23.05■■□□□ 1.28
USP54Q70EL1 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
USP54Q70EL1 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC23.05■■□□□ 1.28
USP54Q70EL1 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC23.05■■□□□ 1.28
USP54Q70EL1 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC23.05■■□□□ 1.28
USP54Q70EL1 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
USP54Q70EL1 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
USP54Q70EL1 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms